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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55991.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  65/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:209 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->184 3g7rB PDBj 7e-10 31.4 %
:RPS:PDB   5->195 3e7qB PDBj 5e-15 17.3 %
:RPS:SCOP  17->85 1z77A1  a.4.1.9 * 4e-12 29.0 %
:HMM:SCOP  10->85 2fd5A1 a.4.1.9 * 3.7e-17 38.2 %
:HMM:SCOP  88->199 2gfnA2 a.121.1.1 * 2.3e-10 33.9 %
:HMM:PFM   21->67 PF00440 * TetR_N 1.6e-15 42.6 47/47  
:BLT:SWISS 1->78 TTGW_PSEPU 5e-08 41.1 %
:BLT:SWISS 63->187 TRPD_RHISN 2e-05 35.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55991.1 GT:GENE BAD55991.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1272421..1273050 GB:FROM 1272421 GB:TO 1273050 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55991.1 LENGTH 209 SQ:AASEQ MASHAAAKAPSRRRAHTRNRLLAAAYEVFAAEGFGRATVEKVCERAGFTRGAFYSNFTSLDELFLAMWEQRSAELLTDVRAALDEISVDGVTDVRAAVDGLLRAVPLDDAWFRITAEFTAHALRTPALRRVMAAREEAIVAALMPTVVAALARAGRTVADPVALGQALVAVHDGTAAQVLMEPDNAAVHRRRAELFCHVVLAYSTPNGG GT:EXON 1|1-209:0| BL:SWS:NREP 2 BL:SWS:REP 1->78|TTGW_PSEPU|5e-08|41.1|73/134| BL:SWS:REP 63->187|TRPD_RHISN|2e-05|35.5|124/337| BL:PDB:NREP 1 BL:PDB:REP 2->184|3g7rB|7e-10|31.4|169/199| RP:PDB:NREP 1 RP:PDB:REP 5->195|3e7qB|5e-15|17.3|191/210| HM:PFM:NREP 1 HM:PFM:REP 21->67|PF00440|1.6e-15|42.6|47/47|TetR_N| RP:SCP:NREP 1 RP:SCP:REP 17->85|1z77A1|4e-12|29.0|69/75|a.4.1.9| HM:SCP:REP 10->85|2fd5A1|3.7e-17|38.2|76/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 88->199|2gfnA2|2.3e-10|33.9|112/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 94 OP:NHOMOORG 65 OP:PATTERN -------------------------------------------------------------------- --1-3---------2-1----3--12-----143332222---11-2-2------1-1-----2-13131------------1-----------------------------------------------------------------------------------1-----------------------------------1----------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------1111----------1-------------------2------1-------------------------------------------------------------1-------1---1--1---11-311111-1--------111--------11----------------------------111--1---------------1----------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------1----------1-------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 205 STR:RPRED 98.1 SQ:SECSTR #HHHTccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHTcHHHHcGGGHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHTTHHHccH### DISOP:02AL 1-20, 206-209| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccc //