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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55992.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  86/915 : Eukaryota  19/199 : Viruses  0/175   --->[See Alignment]
b.52.1c.3.1c.47.1
:563 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->273 1qo8A PDBj 4e-06 32.0 %
:RPS:PDB   39->361 1d4cB PDBj 2e-18 22.1 %
:RPS:SCOP  84->248 1d5tA1  c.3.1.3 * 4e-04 19.4 %
:RPS:SCOP  222->298 1a8yA3  c.47.1.3 * 2e-15 17.1 %
:RPS:SCOP  460->520 2pnwA1  b.52.1.4 * 9e-04 14.8 %
:HMM:SCOP  3->560 1jnrA2 c.3.1.4 * 3.2e-38 28.9 %
:RPS:PFM   181->276 PF01134 * GIDA 7e-05 44.2 %
:HMM:PFM   15->544 PF00890 * FAD_binding_2 1.5e-114 39.4 411/421  
:BLT:SWISS 51->273 FRD2_SHEFN 1e-05 32.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55992.1 GT:GENE BAD55992.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1273047..1274738 GB:FROM 1273047 GB:TO 1274738 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55992.1 LENGTH 563 SQ:AASEQ MTMTNCSPEFARQADVIVVGAGLAGLVAAHELALAGRTVHLLDQENRNNLGGQAFWSLGGLFLVDTPEQRRLGIKDSYELALQDWLGSAGFDRDDEDHWARQWAQAYVRFAATEKRDYLRDLGLRVTPLVGWAERGGGLADGHGNSVPRFHLTWGTGPEVVRVFAEPVLDAERRGLVGFSFRHRVDELIVEDGAVVGVRGSVLEDTDLARGRASSRTVVDEFEFRAKAVVVTSGGIGHNHEMIRRNWPTERLGRCPETLISGVPAHVDGRMLAISEAAGGAIVNRDRMWHYTEGIHNWDPVWPDHAIRIIPGPSSMWFDATGKRLPAPCFPGFDTNATMKAILAAGYDYSWFVLTQAIIEKEFALSGSEQNPDITGKDIKLTLKSRVAKGAPGPVEAFKQHGVDFVVADTLAELVRGMNKIARGPQLDLAELERQIVARDREIDNKFSKDAQLMAITNARQSFADKAGRVAKPHRILDPKAGPLIAVRLNILTRKTLGGLQTNLDSQVMRPDGTPLPGLYAAGEVAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRALARSLA GT:EXON 1|1-563:0| BL:SWS:NREP 1 BL:SWS:REP 51->273|FRD2_SHEFN|1e-05|32.0|181/588| SEG 14->36|advivvgaglaglvaahelalag| SEG 521->535|aagevagfggggvhg| SEG 550->562|sgraagralarsl| BL:PDB:NREP 1 BL:PDB:REP 51->273|1qo8A|4e-06|32.0|181/564| RP:PDB:NREP 1 RP:PDB:REP 39->361|1d4cB|2e-18|22.1|276/566| RP:PFM:NREP 1 RP:PFM:REP 181->276|PF01134|7e-05|44.2|77/391|GIDA| HM:PFM:NREP 1 HM:PFM:REP 15->544|PF00890|1.5e-114|39.4|411/421|FAD_binding_2| GO:PFM:NREP 2 GO:PFM GO:0008033|"GO:tRNA processing"|PF01134|IPR002218| GO:PFM GO:0050660|"GO:FAD binding"|PF01134|IPR002218| RP:SCP:NREP 3 RP:SCP:REP 84->248|1d5tA1|4e-04|19.4|155/336|c.3.1.3| RP:SCP:REP 222->298|1a8yA3|2e-15|17.1|76/112|c.47.1.3| RP:SCP:REP 460->520|2pnwA1|9e-04|14.8|61/354|b.52.1.4| HM:SCP:REP 3->560|1jnrA2|3.2e-38|28.9|301/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 110 OP:NHOMOORG 105 OP:PATTERN -------------------------------------------------------------------- ----11-----1-111122-21--1111111111111111-----1111---111-----111-2-1111------------1-------------------------------------------------------------1---------------------------------------1112---------------------------------11---------1------------------1-------------------------------------------------------------------------------------------------------------------------1-------------111------1-11111-11111----------1--1111--1-----------1------11--------------1-----------------------------------------------------------------------------11---1------------------------------------------1--------------------------------------------1-------------1---------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11----------------------------------------------------- --------------------1111-1----------------------11111111111111----------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 463 STR:RPRED 82.2 SQ:SECSTR ######################################EEEEcccccccccTTGGGccccEEccccHHHHHTTccccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccEEEccTTcccccEEEcccccccTTcccccEEEcTcHHHHHHHHHHHHHHHHHHTTTcEEEccEEEEEEEEccccEEEEEEEETTT##EEEEETTEEEEEEEEEEEccEEEEcccccTTcHHHHHHHcGGGTTcEEcccccccTTcccHHHHHHHHHTTTccEEcTTcEEEEEEEcTTTcccccTHHGHHHHHTTcEEEcccccccccTTccHHHcccHHHHHHTcTTccEEEEEEHHHHHHEEEEcTTEEEEEEEETEcccccccEEEEccccGGGccEEEEccTTccHHHHHHHHHHHHHHH###HHHHTccHHHHHHHHHH############HHHHHHTTccTT##TcccccccccccccEEEEEEEEEEEEEccEEEccTTcEEEcTTccEEEEEE########################################### DISOP:02AL 1-4| PSIPRED cccccccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEEccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccEEEEEccccHHHHHHHHHHHHHHHHHcccEEEEccEEEEEEEEccEEEEEEEEEEccccEEEEEccccEEccEEEEEEcEEEEEcccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccEEccccEEEcccccccccccccccEEEEEccccEEEEccccccccccccccccHHHHHHHHHcccccEEEEEEcHHHHHHHccccccccccccccccHHHHHHHHHHHccHHHHHHHHHccccEEEcccHHHHHHHHcccHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHccHHcccccccccccccccccccccEEEEEEcccEEEEcccEEEccccEEEccccccccccEEcccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc //