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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55993.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  285/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:248 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   128->243 1yspA PDBj 5e-15 36.2 %
:RPS:PDB   11->81 2d1hA PDBj 1e-05 15.5 %
:RPS:PDB   84->244 3d3oB PDBj 5e-17 16.2 %
:RPS:SCOP  6->79 1mkmA1  a.4.5.33 * 7e-12 30.1 %
:RPS:SCOP  84->245 1td5A  d.110.2.2 * 1e-24 26.5 %
:HMM:SCOP  6->80 1mkmA1 a.4.5.33 * 3.6e-18 41.9 %
:HMM:SCOP  63->245 1tf1A_ d.110.2.2 * 9.3e-31 39.0 %
:RPS:PFM   128->244 PF01614 * IclR 2e-15 43.6 %
:HMM:PFM   128->242 PF01614 * IclR 2.4e-23 37.4 115/129  
:HMM:PFM   8->58 PF09339 * HTH_IclR 1.7e-18 43.1 51/52  
:BLT:SWISS 6->245 ICLR_ECOLI 7e-18 30.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55993.1 GT:GENE BAD55993.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1274758..1275504) GB:FROM 1274758 GB:TO 1275504 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD55993.1 LENGTH 248 SQ:AASEQ MEPSGVQTVTRALSVLDCFRGGDSRGVSEVARAQGIPVSTAHRLLTALVRAGFLEKDPASSRYRIGRALAEYGQIAYRQHRIYLAEPLLEQLAGTTGASASIATRHDIHAVLLGTSRWRESDGHRLQGVRLPLHASALGKALLAWSDVGDADLRALPYDEGTERSVTGPAELRAELSLTRERGYAYNDEELDPGFRTIGLPIPDPDGGCRFALGLRGPTTLMIPERVPFFVELAKVTARDIAAAFATP GT:EXON 1|1-248:0| BL:SWS:NREP 1 BL:SWS:REP 6->245|ICLR_ECOLI|7e-18|30.0|233/274| SEG 93->104|agttgasasiat| BL:PDB:NREP 1 BL:PDB:REP 128->243|1yspA|5e-15|36.2|116/164| RP:PDB:NREP 2 RP:PDB:REP 11->81|2d1hA|1e-05|15.5|71/98| RP:PDB:REP 84->244|3d3oB|5e-17|16.2|154/163| RP:PFM:NREP 1 RP:PFM:REP 128->244|PF01614|2e-15|43.6|117/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 128->242|PF01614|2.4e-23|37.4|115/129|IclR| HM:PFM:REP 8->58|PF09339|1.7e-18|43.1|51/52|HTH_IclR| RP:SCP:NREP 2 RP:SCP:REP 6->79|1mkmA1|7e-12|30.1|73/75|a.4.5.33| RP:SCP:REP 84->245|1td5A|1e-24|26.5|162/179|d.110.2.2| HM:SCP:REP 6->80|1mkmA1|3.6e-18|41.9|74/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 63->245|1tf1A_|9.3e-31|39.0|177/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 812 OP:NHOMOORG 292 OP:PATTERN ------------------------71122-53------------------------------------ --2-1--1333---132----3---8------422468JI1---132----134821---113152826521---233----2-----------------------------------------------------21111----2-------------------------------------3211311-31-------1--1-----132211-1--23-2--------31------------------------------------------------------------------------------------------12--------------1--1-------------11-1--1214---2---------------1-21---112-1-----------1---1--1-162--1222-13--13231---1141122111-------------1----------------------------------2--286443335331222222372222225245462--332--3--21213-2111---------------211-1-------------222143311-------------------------------------2-------------------------------1-1------422322-6446666645-456465645447566666414223---626564666665655534324443--211221122222----------------2-1111-1--1-11-------------2-------1--1111-11--------------1------1-12-----------------------------------------------------------------111-1--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 244 STR:RPRED 98.4 SQ:SECSTR ###HHHHHHHHHHHHHHHHHHcccEEHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEEETTEEEEEEEEcccEEEEcTTcHHHHHHHHHHHHHccEEEEEEEETTEEEEEEEEccccccccccccccEEGGcHHHHHTTcHHHHHHHHHHHHHHHHHHHGGGTcccccHHHHHHHHHHHcEEEEEccccTTEEEEEEEccccTTccEEEEEEEHHHHHHHHHTHHHHHHHHHHHHHHHTcccTc# DISOP:02AL 1-4, 247-248| PSIPRED ccccHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEEEccEEEEEEEEcccccEEEEEccccccHHccHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEcccHHcccEEEEEEEEcccccEEEEEEEEccHHcccHHHHHHHHHHHHHHHHHHHHHHccc //