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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55995.1
DDBJ      :             putative ABC transporter membrane protein
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  488/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:282 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   120->212 3dhwA PDBj 1e-05 28.0 %
:RPS:PDB   171->210 3dhwA PDBj 2e-10 35.0 %
:RPS:SCOP  124->275 2r6gG1  f.58.1.1 * 6e-15 15.8 %
:RPS:PFM   170->274 PF00528 * BPD_transp_1 8e-06 32.4 %
:HMM:PFM   103->270 PF00528 * BPD_transp_1 5.1e-30 28.0 168/185  
:BLT:SWISS 31->275 SSUC_ECOLI 4e-45 46.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55995.1 GT:GENE BAD55995.1 GT:PRODUCT putative ABC transporter membrane protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1276793..1277641 GB:FROM 1276793 GB:TO 1277641 GB:DIRECTION + GB:PRODUCT putative ABC transporter membrane protein GB:PROTEIN_ID BAD55995.1 LENGTH 282 SQ:AASEQ MAVLTPPLPATAQATPLTAPRARTERSRPAWVSVPLRFLLPALFVAAWWIGSATGAISERVIAGPPAVWTAFTELLGNGQLIDFALASFVRAALGVGIGVSAGLLLGLVSGLSALGEELVDSTMQILRAVPFLALVPLFIAWFGIDELYKILLIAVATVAPMYAYTYLGVRNVDRKMVEAARGFGLSGARLVREVVLPSALPGVLMALRVCLSISITGLIAAEQVGTREGVGYLVTLAQEYNRTDYMVLCVVLYALLGLVFDGLVRLLERFAMPWRKQVAIR GT:EXON 1|1-282:0| BL:SWS:NREP 1 BL:SWS:REP 31->275|SSUC_ECOLI|4e-45|46.9|245/263| TM:NTM 6 TM:REGION 1->17| TM:REGION 32->54| TM:REGION 87->109| TM:REGION 129->151| TM:REGION 195->217| TM:REGION 247->269| SEG 4->24|ltpplpataqatpltaprart| SEG 92->116|aalgvgigvsaglllglvsglsalg| BL:PDB:NREP 1 BL:PDB:REP 120->212|3dhwA|1e-05|28.0|93/203| RP:PDB:NREP 1 RP:PDB:REP 171->210|3dhwA|2e-10|35.0|40/203| RP:PFM:NREP 1 RP:PFM:REP 170->274|PF00528|8e-06|32.4|105/195|BPD_transp_1| HM:PFM:NREP 1 HM:PFM:REP 103->270|PF00528|5.1e-30|28.0|168/185|BPD_transp_1| GO:PFM:NREP 3 GO:PFM GO:0005215|"GO:transporter activity"|PF00528|IPR000515| GO:PFM GO:0006810|"GO:transport"|PF00528|IPR000515| GO:PFM GO:0016020|"GO:membrane"|PF00528|IPR000515| RP:SCP:NREP 1 RP:SCP:REP 124->275|2r6gG1|6e-15|15.8|152/284|f.58.1.1| OP:NHOMO 1678 OP:NHOMOORG 518 OP:PATTERN ----1----------------1-1--------11-1112222212121122221----------1-11 -1--4---112-1-333----3---9------26668964-514311--111513-21--1---2336163-111------12----1------11----------------------------11---1-----111122---332-3222313342-1---21-242121-------------11----1-2333333444353334712213432213211-1111111D222222222222222133211-11331-1--11--43--2-11---111-1-1122------------------------111---111-11229---122221235771---3231-32---76142-1--52111-11---222------54EFN-35A22A344434343438-BAA98B984B2-HAA976989A76KC---4181533333323333331---31-2-----------------------------1-11-15GEC439AA9333332777A333323A5K9686-3552133-15544FC-51152421----------1221261231-2-1--2116--2-3--22222815-211-----------------1-----111--11---1-----------------------21-------3334-222222222222-222222221222222222246466-------------------31122122--133333313333--------------112-1------111-1--15554513---9654346876247344654---------21112-----332111-2--------------3-------------------------------------------1--1---1---1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------3---------------------2--2---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 93 STR:RPRED 33.0 SQ:SECSTR #######################################################################################################################HHHHHHHHHHccHHHHHHHHHHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHH###################################################################### DISOP:02AL 12-26, 279-282| PSIPRED ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //