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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD55997.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  24/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.1.19c.94.1
:340 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->327 2de2A PDBj 2e-22 33.8 %
:RPS:PDB   1->327 2de3B PDBj 2e-22 26.8 %
:RPS:SCOP  6->320 1dioA  c.1.19.3 * 8e-11 12.0 %
:HMM:SCOP  66->320 2czlA1 c.94.1.1 * 1.5e-14 26.3 %
:RPS:PFM   63->255 PF09084 * NMT1 2e-11 41.9 %
:HMM:PFM   68->256 PF09084 * NMT1 3e-09 26.2 149/216  
:BLT:SWISS 3->327 SOXB_RHOSG 6e-22 33.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD55997.1 GT:GENE BAD55997.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1278372..1279394 GB:FROM 1278372 GB:TO 1279394 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD55997.1 LENGTH 340 SQ:AASEQ MTDTLWYTRCPVPTASGLAHSLGWLGETAAAAGLEFGVLQDAGPELAGHHFLHDLPSLIREGGNVPALAARAQGSPTRLIGLTWIDEAQAILVGPDSPVASPAELAGLRIGVPGWAADQARSFPRAMALHGFANALRLSGHTLADVSVVEVGVDRDPQVRNDVQRQRGTTWGVAELLDGRVDAIYVKGARAAEVAAEHGLRVAVDLDATPERRLRVNNGTPRPITVHADLLEHHPEVVVGFLAQSLRAADWAADNLDGVRAVLQRETLSGPAGVLAAYGADFHRGLHPSLSAERLELLGVQKQFLYTHGFLAADFDLGSWVATEPLDRARELVEAERAAA GT:EXON 1|1-340:0| BL:SWS:NREP 1 BL:SWS:REP 3->327|SOXB_RHOSG|6e-22|33.8|311/365| SEG 328->339|rarelveaeraa| BL:PDB:NREP 1 BL:PDB:REP 3->327|2de2A|2e-22|33.8|311/347| RP:PDB:NREP 1 RP:PDB:REP 1->327|2de3B|2e-22|26.8|314/347| RP:PFM:NREP 1 RP:PFM:REP 63->255|PF09084|2e-11|41.9|160/200|NMT1| HM:PFM:NREP 1 HM:PFM:REP 68->256|PF09084|3e-09|26.2|149/216|NMT1| RP:SCP:NREP 1 RP:SCP:REP 6->320|1dioA|8e-11|12.0|274/551|c.1.19.3| HM:SCP:REP 66->320|2czlA1|1.5e-14|26.3|213/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 52 OP:NHOMOORG 25 OP:PATTERN -------------------------------------------------------------------- ---------------1--------------------111------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------221------22-------------------------------------------------------------------------333----------------3-1------------------------323-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----4----33----3------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 327 STR:RPRED 96.2 SQ:SECSTR ccEEEEEEEcccccHHHHHHHTTHHHHHHHHTTEEEEEccGGGTHHHHcccTTEEEEEcEccHHHHHHHHTTcTTcEEEEEEEEEcccEEEEEcTTcccccGGGGTTcEEEEcHHHHHHHHTccTTGGGccHHHHHHHTTccGGGcEEEEcccTTTcccHHHHHHccHHHHHHHHHHHTcccEEEEEHHHHHHHHTTTcEEcccGGGcGGEEEcccGGcEEEEEEEEHHHHHHcHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHTccHHHHHHHHcTTGGGcccccccHHHHHHHHHHHHHHHHTTcccccccHHHHccHHHHH############# DISOP:02AL 338-340| PSIPRED cccEEEEEEccccHHHHHHHHHccHHHHHHHcccEEEEEccccHHHHHHHHHcccccHHHHcccHHHHHHHHccccEEEEEEEEcccccEEEEEcccccccHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccEEEEEcccccccccEEcccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHccHHHHHHHHHHHHHHHHcc //