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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56001.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  209/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.1.19c.94.1
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->298 3e4rA PDBj 1e-21 27.7 %
:RPS:PDB   2->296 2czlA PDBj 2e-18 14.0 %
:RPS:SCOP  65->296 1dioA  c.1.19.3 * 3e-17 9.4 %
:HMM:SCOP  58->250 1us5A_ c.94.1.1 * 3.8e-30 35.1 %
:RPS:PFM   95->232 PF09084 * NMT1 6e-13 36.2 %
:HMM:PFM   96->233 PF09084 * NMT1 1.1e-20 29.7 138/216  
:BLT:SWISS 2->298 SSUA_ECOLI 2e-26 30.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56001.1 GT:GENE BAD56001.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1282399..1283340 GB:FROM 1282399 GB:TO 1283340 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56001.1 LENGTH 313 SQ:AASEQ MSIRVGYFPHNNSLFVLRHRGILERRLPEVEWVDLRALPAAARVDPRSGLPTLHSDWLFTEGGYDVIGTGFTPPITGLAHGRDLVYLGISGPRVENGRLVTKADSGIRTPADLRGKRVGIAHGSWQTTLLLFALDRAGLRWSDVVPVDTDVHDGGAALLDGSLDAWVGAYPGLAAVEAATELHTLVATEPLFSHPSLWFTRRDFAEHNRAAVTEILAALQESDAWITENPRAAARYFVDDAHARGAAADLDAWEAALRGRPFGVRPVDEAFLDEQQRAADLLAANGLLPRTVRVRDAVLPWVADAVTGTAVPS GT:EXON 1|1-313:0| BL:SWS:NREP 1 BL:SWS:REP 2->298|SSUA_ECOLI|2e-26|30.1|279/319| SEG 239->256|ddahargaaadldaweaa| BL:PDB:NREP 1 BL:PDB:REP 3->298|3e4rA|1e-21|27.7|278/291| RP:PDB:NREP 1 RP:PDB:REP 2->296|2czlA|2e-18|14.0|265/269| RP:PFM:NREP 1 RP:PFM:REP 95->232|PF09084|6e-13|36.2|138/200|NMT1| HM:PFM:NREP 1 HM:PFM:REP 96->233|PF09084|1.1e-20|29.7|138/216|NMT1| RP:SCP:NREP 1 RP:SCP:REP 65->296|1dioA|3e-17|9.4|224/551|c.1.19.3| HM:SCP:REP 58->250|1us5A_|3.8e-30|35.1|188/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 428 OP:NHOMOORG 210 OP:PATTERN -------------------------------------------------------------------- --------------122--------1----------111--1111----1-----------------1-2--------------------------------------------------------------------------1-------1--------------6-5--------------1------1-1------1---11-113----1---1-2-----------2------------------------11---------11----1-----------------------------------------------------------------------------------------------------1--------24545-113-1-21111111111--55355247-1--4224--114---23-------2-----11111111----1-------------------------------------1----24665632111155332222117432121--332-22--33-24--5------------------------------------1------------1------------------------------------------------------------------------1111-111111111111-111111111111111111133311-------------------11111111---11-111-1111---------------------------------3332322---B-4424132534421-665--------------------------1---------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 306 STR:RPRED 97.8 SQ:SECSTR ccEEEEEccHHHHHHHHHHHTTcccccccEEEEEEEEEcccTTccHHHHHHHHHTcEEEcTTcccEEEEEHHHHTTcTTTEEEcccccEEEcccccccccccEEEEcccccccTTcEEEEccTTcHHHHHHHHHcccccTTcEEEEEEccGGGHHHHHHTTcccEEEEcTTHHHHGGGGTcEEEEEHHHHHHHHHcccEEEEEEGGGcHHHHHHHHHHHHHHHHHHHHcGGGGHHHHHHHcTTccHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHTTccccccccccHccHHHHHHH####### DISOP:02AL 313-314| PSIPRED cEEEEEEEccHHHHHHHHHccHHHHcccccEEEEccccccEEEEEEcccccHHHHHHHHHcccccEEEEccHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccccHHHHcccEEEEccccHHHHHHHHHHHHccccHHHEEEEEccHHHHHHHHHcccccEEEEccHHHHHHHHccccEEEEEccccccccEEEEEcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccc //