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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56005.1
DDBJ      :             putative sigma activity regulator
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  71/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.13.2
:321 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   190->302 2vy9A PDBj 1e-09 33.6 %
:RPS:PDB   192->301 1auzA PDBj 3e-14 14.7 %
:RPS:SCOP  188->282 1h4xA  c.13.2.1 * 8e-16 12.6 %
:HMM:SCOP  187->303 1auzA_ c.13.2.1 * 6.1e-20 29.3 %
:RPS:PFM   198->280 PF01740 * STAS 3e-07 34.9 %
:HMM:PFM   191->282 PF01740 * STAS 1.5e-12 26.1 92/117  
:BLT:SWISS 187->312 RSBRA_BACSU 4e-25 38.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56005.1 GT:GENE BAD56005.1 GT:PRODUCT putative sigma activity regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1285724..1286689) GB:FROM 1285724 GB:TO 1286689 GB:DIRECTION - GB:PRODUCT putative sigma activity regulator GB:PROTEIN_ID BAD56005.1 LENGTH 321 SQ:AASEQ MRRGGPTRAAVASRSMEDPVSEVFSPAQAQPGVGGNGERLLSELVEHLRQNRTALREEWARRITDAQLLTAMTPEEIFSEATSIYDNYVEVLETGSVEALQAYARDLSERIIPRGVETDEVLGIVLLLRDVLARSLFEKYQSNFELLNHALDAYEPAANRIASTVAISFVEERERIIRQQQEAIRELSTPVLQVREQLLILPIIGVLDSQRARQLTEQLLRAIRANRAKVVVIDITGVPDIDSTVANHLVQTVDASGLMGANVIITGLSSEIALTLVTIGLDLSKMNAVGDLQGGIEEAERLLGYAVTRTGEHGGRAEPAH GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 187->312|RSBRA_BACSU|4e-25|38.9|126/274| SEG 171->186|eereriirqqqeaire| BL:PDB:NREP 1 BL:PDB:REP 190->302|2vy9A|1e-09|33.6|110/112| RP:PDB:NREP 1 RP:PDB:REP 192->301|1auzA|3e-14|14.7|109/116| RP:PFM:NREP 1 RP:PFM:REP 198->280|PF01740|3e-07|34.9|83/107|STAS| HM:PFM:NREP 1 HM:PFM:REP 191->282|PF01740|1.5e-12|26.1|92/117|STAS| RP:SCP:NREP 1 RP:SCP:REP 188->282|1h4xA|8e-16|12.6|95/111|c.13.2.1| HM:SCP:REP 187->303|1auzA_|6.1e-20|29.3|116/116|c.13.2.1|1/1|Anti-sigma factor antagonist SpoIIaa| OP:NHOMO 327 OP:NHOMOORG 74 OP:PATTERN -----------------------------1-------------1---1-------------------- -11-1----------22-------2-----------2----1----------------------11-122-------------------------------1---111-1--------------------------ILMNT---f----1-------------------1---------------1-------6---------------323345-------2--333333----------------------------------------------------------------------------------------------------------------------------1---------2--1-----------------------------------------2-2----1-----------------------------2---------------2-----------------------------------------------1------11--------1-1---------1--1------------1----------------------------------------1--*-----------------------------11----------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------1------1-------------------------11--11111------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 113 STR:RPRED 35.2 SQ:SECSTR #############################################################################################################################################################################################ccEEEETTEEEEcccccccTTHHHHHHHHHHHHHccccccEEEEEccccccccTTHHHHHHHHHHHHHHHTccccEEcccTTTTHHHHHHccGcGGTcccccGGGTGGGTccH################### DISOP:02AL 1-6, 8-9, 15-23, 180-181, 308-321| PSIPRED cccccHHHHHHHHHHHHcccHHccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHcccHHcccEEccHHHHHHHHHHHHcccccccccccccccccc //