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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56011.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  64/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.43.1
:448 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   3->441 2e1tA PDBj 9e-16 11.8 %
:RPS:SCOP  80->152 1l5aA1  c.43.1.2 * 7e-04 18.6 %
:HMM:SCOP  98->153 1q9jA1 c.43.1.2 * 0.00015 30.9 %
:HMM:SCOP  199->449 1q9jA2 c.43.1.2 * 0.0002 22.2 %
:RPS:PFM   6->258 PF03007 * UPF0089 5e-42 48.0 %
:RPS:PFM   298->447 PF06974 * DUF1298 3e-18 42.5 %
:HMM:PFM   4->258 PF03007 * UPF0089 1.8e-87 43.9 255/263  
:BLT:SWISS 1->447 Y3761_MYCBO e-148 57.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56011.1 GT:GENE BAD56011.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1291827..1293173 GB:FROM 1291827 GB:TO 1293173 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56011.1 LENGTH 448 SQ:AASEQ MQWMSPTDSMFLLAESREHPMHVGALQLYSPPPDGDPDYVRSMYEKVCQATEFRPTFRKHPARIFGGFGNIAWTTDDTVDLDYHLRRSALPRPGRVRELLELTSQLHSTLLDRHRPLWEAHLVEGLADGRFAVYTKLHHALMDGVSALRMLQRTLDEDPDSPELRVPWNLPPRASGGRGGDRSWLTGLARDVARTPPATLALARTALAEHEVLLPFSAPKTMLNVRIGGARRCAAQSWPLERIAAIRERTGVTLNDVVLAMCAAALRAYLIENDALPDTPLVAMVPVSLRTEDESDEGGNRVGTILCNLATDLADPAARLTAISESARIGKEQMSALPRPLALGVSALMIAPLGLVGLPGFVTATRPAFNIVISNVPGPRVPMYWQGARLDGNYPLSIVLDGQAVNITVSSRDAYLDFGIVGCRRSVPHLQRLLGHLEDGLTDLEKAA GT:EXON 1|1-448:0| BL:SWS:NREP 1 BL:SWS:REP 1->447|Y3761_MYCBO|e-148|57.9|447/454| TM:NTM 1 TM:REGION 341->363| SEG 193->208|artppatlalartala| RP:PDB:NREP 1 RP:PDB:REP 3->441|2e1tA|9e-16|11.8|408/440| RP:PFM:NREP 2 RP:PFM:REP 6->258|PF03007|5e-42|48.0|250/259|UPF0089| RP:PFM:REP 298->447|PF06974|3e-18|42.5|146/152|DUF1298| HM:PFM:NREP 1 HM:PFM:REP 4->258|PF03007|1.8e-87|43.9|255/263|UPF0089| RP:SCP:NREP 1 RP:SCP:REP 80->152|1l5aA1|7e-04|18.6|70/174|c.43.1.2| HM:SCP:REP 98->153|1q9jA1|0.00015|30.9|55/175|c.43.1.2|1/1|CoA-dependent acyltransferases| HM:SCP:REP 199->449|1q9jA2|0.0002|22.2|230/0|c.43.1.2|1/1|CoA-dependent acyltransferases| OP:NHOMO 358 OP:NHOMOORG 66 OP:PATTERN -------------------------------------------------------------------- -11-----------5A9FE-EB11N8FFFFFCDFGF48H9----------------------5-131111--------------------------------------1------------------------------22------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------1--2----------------------------------------1----1231---3-----------------------------------------------1------------------------------11-14---------------------------------------------------------------------------------------------------------------------------------------24-----------------1111111112--------------------------------1----------------------------------------------------------------------------------- --------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 427 STR:RPRED 95.3 SQ:SECSTR ##EccHHHHTTTTcccEEEEEEEEccccHHHHHHTHHHHHHHHHHHHHHHcGGGcEEEEcccEEEEcTTccEEEEEEEEcccGGTcccccEEGGGcGGGcccccccEEccccEEEEcEEEEEEEEETTTEEEEEEEEcGGGccHHHHHHHHHHHHHHHHTTcccHHHHHHcccccTTcccccccccHHHHH######HHHHHHcHHHHHHHcccccccccccEEEEEEEEcHHHHHHHHHHHHHHcTTcccccHHHHHHHHHHHHHHHH######HcccEEEEEEEEEcGGGcccccTTcccccEEEEEEEEEGGGTcHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccHTTcccccHHHHHccccEEEEEEccccTTccGGEGGcccccccccEEEEGGGGGccEEEEEEcccccccEEEEEEEEHHHHHHHHHHHHc####### DISOP:02AL 1-2, 166-180, 325-338| PSIPRED cccccHHHHHHHHHcccccccHHEEEEEEcccccccHHHHHHHHHHHHHHHHHcccHHcEEEEccccccccEEEEcccccccccEEEEEccccccHHHHHHHHHHHHHcccccccccEEEEEEEccccccEEEEEEHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccccEEEccEEEEEEEEEcccccccEEEEEEEEEccEEEEEEEEcHHHcccHHHHHHHHHHHHHHHHHHc //