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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56015.1
DDBJ      :             putative amidase
Swiss-Prot:             

Homologs  Archaea  46/68 : Bacteria  745/915 : Eukaryota  170/199 : Viruses  0/175   --->[See Alignment]
c.117.1
:538 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   75->493 3h0lA PDBj 9e-36 35.5 %
:RPS:PDB   41->492 2dqnA PDBj 7e-64 22.7 %
:RPS:SCOP  41->492 2df4A1  c.117.1.1 * 1e-64 22.7 %
:HMM:SCOP  35->497 1m22A_ c.117.1.1 * 1.5e-99 39.4 %
:RPS:PFM   60->469 PF01425 * Amidase 2e-30 38.1 %
:HMM:PFM   59->477 PF01425 * Amidase 2.6e-92 36.8 410/435  
:BLT:SWISS 36->487 GATA_JANSC 3e-51 36.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56015.1 GT:GENE BAD56015.1 GT:PRODUCT putative amidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1296793..1298409) GB:FROM 1296793 GB:TO 1298409 GB:DIRECTION - GB:PRODUCT putative amidase GB:PROTEIN_ID BAD56015.1 LENGTH 538 SQ:AASEQ MGAAVGATALPGLAHGVPLPRRPAPRLPDPATVSATDPAMLTALEAASLLQARTLHPVDLLDACLRRSADYDGATNAWIRTYPELAHDQAEQAAQRLAAGDAPLLCGLPIAVKDLYAVAGLPLTASSRVLDGNIAAGDATVWRRLREHGAVLLGHTHTDEFAIMTATPQVGNPWKTDDTAGGSSGGSAAALAARYAPLALGTDTGGSARLPASRCGVSAIKPTFGRCSKYGVIPVMWTRDHPAAMGRTLADAALLLSFMAGADANDPVTGTAPPLPAAGFPFTAPEAAKPLGGRVFGVPVAADRLPAELGRLFTEFLGVVTDLGGELREVRMPAEPEGLATGDAVELGMYHRQWIEQLGLFRPLSAAVVEVGLASLGIPSTDYLQYSRARATYQRAYNRLFDEDGIDALVLPGAATDGMPRSTAAAASILGADHVPVTWANYSGAPALSLPAGRSRVTGLPFGVQLGGRPWGEADLLPLGLAIEAAAPHWRDVPPLRPNPRPLPQVGLRTPGPGPDPTNTDAAAPAFSFIPTTTAAPV GT:EXON 1|1-538:0| BL:SWS:NREP 1 BL:SWS:REP 36->487|GATA_JANSC|3e-51|36.4|439/494| SEG 18->31|plprrpaprlpdpa| SEG 180->201|aggssggsaaalaaryaplalg| SEG 494->504|pplrpnprplp| SEG 510->526|tpgpgpdptntdaaapa| BL:PDB:NREP 1 BL:PDB:REP 75->493|3h0lA|9e-36|35.5|408/478| RP:PDB:NREP 1 RP:PDB:REP 41->492|2dqnA|7e-64|22.7|441/485| RP:PFM:NREP 1 RP:PFM:REP 60->469|PF01425|2e-30|38.1|394/425|Amidase| HM:PFM:NREP 1 HM:PFM:REP 59->477|PF01425|2.6e-92|36.8|410/435|Amidase| GO:PFM:NREP 1 GO:PFM GO:0016884|"GO:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"|PF01425|IPR000120| RP:SCP:NREP 1 RP:SCP:REP 41->492|2df4A1|1e-64|22.7|441/485|c.117.1.1| HM:SCP:REP 35->497|1m22A_|1.5e-99|39.4|447/490|c.117.1.1|1/1|Amidase signature (AS) enzymes| OP:NHOMO 2146 OP:NHOMOORG 961 OP:PATTERN 11----2333333332--11111211111123-1-11-111111111111111-------------11 36B2311211211143355-53117D55555534446CAA23232231143143321211253226824221111111-111511111--------1------112112111111111-11111111111111111433331111423222232211111211121334531111111111114232211151111111112111112111222121122122112111113411111111111111111111111122121111111111111121111111111111111111111111111111111111111111111111-2111111111111-111---11211111112211111211111111161153351111121HHJ224B58A133443431223-867745595671944843443263H516233554453463333333343321122111111111111111111111111111112329119DB877575793666655B866673877966D81322134533639385441111111111111111114323231121111111111111112134335611111111111111111111111111122----21-1212-------1------1---2--11232-------123--2------------------------------12111-1-----------------2----------11111111111----11111222213425---------------221221212212434325252233116461111111111--------------1111111-------11111111221111111111-----1---1---1----111--1111112112111211 11--12--1-----224333433252222122223223131222121-1473583642122242211-1111211---11-222222--12241111113--1212-21172221111-1-21131122372-2261111211221212121-11222121-162114225--311111C22115A34A427--21111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 453 STR:RPRED 84.2 SQ:SECSTR ########################################ccHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHTTccccccccEEEEETTcccTTccccTTcGGGTTcccccccHHHHHHHHTTcEEEEEEcccGGGccccccccccTTcTTcccccccHHHHHHHHTTcccEEEEEccccTTHHHHHHHTcEEEEccTTccccTTcccccTTTccEEEEEccHHHHHHHHHHHccccTTcTTcccccccccHHHHTccTTTTcccTTcEEEEEGGcTTccHHHHHHHHHHHHHHHHTTcEEEEEccGGGGGHHHHHHHHHHHHHHHHTTTccccccccccccccHHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHTTHHccEEEEEccccccccTTTcTTcHHHHHHTTTTTHHHHHTccEEEEEEEEETEETEEEEEEEEccTTcHHHHHHHHHHHHHHccccTTc############################################# DISOP:02AL 23-33, 504-514, 536-538| PSIPRED cHHHHHHHHccccHHHcccccHHcccccccccccccHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccEEEEcccccHHHccccccccccccccccccccccHHHHHHHHccccEEEEccccccHHHHHHHHcccEEEccccccccccccccHHccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEcccccccccEEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccccccc //