[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56018.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  1/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:123 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->77 3f52E PDBj 4e-06 61.3 %
:RPS:PDB   47->77 2aw6A PDBj 8e-06 16.7 %
:RPS:SCOP  47->77 1y7yA1  a.35.1.3 * 2e-04 29.0 %
:HMM:SCOP  25->103 1y9qA1 a.35.1.8 * 6e-13 39.2 %
:HMM:PFM   37->90 PF01381 * HTH_3 3.8e-15 35.2 54/55  
:BLT:SWISS 47->73 Y4DJ_RHISN 6e-04 55.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56018.1 GT:GENE BAD56018.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1300322..1300693) GB:FROM 1300322 GB:TO 1300693 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56018.1 LENGTH 123 SQ:AASEQ MTEHPRLHSIPGGRADRRPEPDTAAEPLWREVLGERLRLLRREQDETLAETAARAGISPQYLSEVERGRKEPSSEMIAALAGALGTTLGGLTELVADELRMRRRRAAFARRSSAGPTLTLRAA GT:EXON 1|1-123:0| BL:SWS:NREP 1 BL:SWS:REP 47->73|Y4DJ_RHISN|6e-04|55.6|27/77| SEG 28->43|lwrevlgerlrllrre| SEG 78->92|aalagalgttlgglt| SEG 100->114|rmrrrraafarrssa| BL:PDB:NREP 1 BL:PDB:REP 47->77|3f52E|4e-06|61.3|31/78| RP:PDB:NREP 1 RP:PDB:REP 47->77|2aw6A|8e-06|16.7|30/287| HM:PFM:NREP 1 HM:PFM:REP 37->90|PF01381|3.8e-15|35.2|54/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 47->77|1y7yA1|2e-04|29.0|31/69|a.35.1.3| HM:SCP:REP 25->103|1y9qA1|6e-13|39.2|79/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 1 OP:NHOMOORG 1 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 32 STR:RPRED 26.0 SQ:SECSTR #############################################ccHHHHHHTTTccHHHHHHHHTTcccccHHHH############################################## DISOP:02AL 1-29, 105-123| PSIPRED ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHHHHccccccccccccc //