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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56021.1
DDBJ      :             putative cholesterol oxidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  37/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.3.1
:530 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   60->526 1b8sA PDBj 7e-56 36.7 %
:RPS:PDB   60->526 1cboA PDBj 3e-37 32.1 %
:RPS:SCOP  60->379 1b4vA1  c.3.1.2 * 3e-14 33.0 %
:RPS:SCOP  462->524 1tzlA1  c.3.1.2 * 2e-08 19.4 %
:HMM:SCOP  37->525 1coyA1 c.3.1.2 * 2.5e-34 26.8 %
:RPS:PFM   463->515 PF05199 * GMC_oxred_C 2e-05 48.1 %
:HMM:PFM   460->517 PF05199 * GMC_oxred_C 2.2e-17 39.3 56/145  
:HMM:PFM   236->327 PF00732 * GMC_oxred_N 1.6e-05 20.2 89/298  
:HMM:PFM   47->76 PF00890 * FAD_binding_2 1.2e-05 43.3 30/421  
:BLT:SWISS 60->526 CHOD_STRS0 5e-55 36.5 %
:PROS 503->511|PS00221|MIP
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56021.1 GT:GENE BAD56021.1 GT:PRODUCT putative cholesterol oxidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1304148..1305740) GB:FROM 1304148 GB:TO 1305740 GB:DIRECTION - GB:PRODUCT putative cholesterol oxidase GB:PROTEIN_ID BAD56021.1 LENGTH 530 SQ:AASEQ MSEITRRSLLTGAAAAGVLLAAAHSTGRQPVAARVNQIPLTREEHRAVVVGSGFGGGVSALRLAQAGVPVLLLERGMRWPTGPNAETFPRASAPDKRLLWYRSNPNLFGQPLAFEPYTGLIEAVAGANMTALCAAGLGGGSLVYQGMSLQPARAVFELHFPAELDWDVLDRVHFPRVARMLGLAVAPDELIDSPNYLAARVFADHVRKAGLPLDKIPMPIDWNYALAELRGEMKPSYTNGDGAMGVNNGGKNSVDVTYIAAAEATGLVQVETLHQVTDVERAADGRWTVHVDRLDTTGAVLEQKIITTGALIMAAGSLNTTKLLVRAAATGRIPDLPDALGHGWGTNADRIYAWVNPAANFGRAQGGPVVYGSKIWDDPHLACTLIQASIPPLQVDPMSTMMVGYGVSADRGHFAYDHAAEEAVLHWPATGDATIQNTRIGPLAHRIAGPGTVLIDTNELFPSTWHALGGACMGTVCDVYGRVHDQPGLYVLDGALMPGNTAACNPSMTIAAVAEHALDTLVAEDVGTVI GT:EXON 1|1-530:0| BL:SWS:NREP 1 BL:SWS:REP 60->526|CHOD_STRS0|5e-55|36.5|458/546| PROS 503->511|PS00221|MIP|PDOC00193| SEG 9->23|lltgaaaagvllaaa| SEG 48->59|vvvgsgfgggvs| SEG 131->142|alcaaglgggsl| BL:PDB:NREP 1 BL:PDB:REP 60->526|1b8sA|7e-56|36.7|458/498| RP:PDB:NREP 1 RP:PDB:REP 60->526|1cboA|3e-37|32.1|464/498| RP:PFM:NREP 1 RP:PFM:REP 463->515|PF05199|2e-05|48.1|52/140|GMC_oxred_C| HM:PFM:NREP 3 HM:PFM:REP 460->517|PF05199|2.2e-17|39.3|56/145|GMC_oxred_C| HM:PFM:REP 236->327|PF00732|1.6e-05|20.2|89/298|GMC_oxred_N| HM:PFM:REP 47->76|PF00890|1.2e-05|43.3|30/421|FAD_binding_2| GO:PFM:NREP 1 GO:PFM GO:0016614|"GO:oxidoreductase activity, acting on CH-OH group of donors"|PF05199|IPR007867| RP:SCP:NREP 2 RP:SCP:REP 60->379|1b4vA1|3e-14|33.0|315/366|c.3.1.2| RP:SCP:REP 462->524|1tzlA1|2e-08|19.4|62/379|c.3.1.2| HM:SCP:REP 37->525|1coyA1|2.5e-34|26.8|358/372|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 45 OP:NHOMOORG 37 OP:PATTERN -------------------------------------------------------------------- --1-1----------------1-----------111231--1-2----------1-----11--2122-1-----------------------------------------------------------------------------------------1------1--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111----1111-------1------1----------------------------------------------------------1-2--------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------1-1------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 467 STR:RPRED 88.1 SQ:SECSTR ###########################################################HHHHHHTTccEEEEEccccccccTTccccccTTcccGGGcccccccHHGGGccccccccccEEEEEccccEEEEEccTTGGGTTcccccccccHHHHHHHcTTccHHHHHHTHHHHHHHHHHTcccccHHHHHHcGGHHHHHHHHHHHHTTccEEEccccccHHHHHHHHTTcccccGGGTccTTcccccccccTTTTHHHHHHHTTcEEEEEcEEEEEEEEcTTccEEEEEEEEcTTccEEEEEEEEEEEEEEccHHHHHHHHHHHHHHTTccTTccTTTTcccccTTEEEEEEEccTTccccccccccccEEEEEccccTTcEEEEEEccTTcccccEEEEEEEEccccccEEEEETTTTEEEEEccGGGGHHHHHHHHHHHHHHHHHHTcEEccccccccEEccccccccTTTTccTTcccTTcccEEEccGGGccccccccccHHHHHHHHHHHHHHHHHHTc#### DISOP:02AL 1-2, 30-39, 331-333| PSIPRED cccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEcccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEcEEcccHHHHcEEEEcccHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEccEEEEEEEccccEEEEEEEEEcccccEEEEEEEEccEEEEEccccHHHHHHHHHHHccccccccHHHHcccccccHHHEEHHHHHHHHcccccccEEEEEHHcccccccccEEEccccccccccHHHHHccccccccccEEEEccccccEEEEcccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccEEccEEccccEEEccccEEEEccHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccc //