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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56025.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  12/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:211 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->89 2qopA PDBj 1e-05 36.1 %
:BLT:PDB   120->158 2wb5A PDBj 8e-04 52.6 %
:RPS:PDB   18->203 3br5E PDBj 9e-12 10.9 %
:RPS:SCOP  13->86 2fd5A1  a.4.1.9 * 3e-09 25.7 %
:HMM:SCOP  12->88 2gfnA1 a.4.1.9 * 5.5e-10 32.5 %
:HMM:PFM   23->68 PF00440 * TetR_N 9.6e-06 34.8 46/47  
:HMM:PFM   69->137 PF11740 * KfrA_N 0.001 22.4 67/120  
:BLT:SWISS 9->89 ACRR_SHIFL 6e-06 33.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56025.1 GT:GENE BAD56025.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1309020..1309655 GB:FROM 1309020 GB:TO 1309655 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56025.1 LENGTH 211 SQ:AASEQ MTEADSSNRRANRRGMATRESMLDAALRSLATGDPGSVSGNRIAKDIGATWGALKYQFGDIDGLWAAVLRRTAERRGELPVGLAPGGPLRERVAATVDTLFRGLTGTDSRAIETLRAALPREHAELERLYPRTAAELASWNKAWVRACQKAFADLDVDPERVREVAAFLPGAMRGIVSEQQLGTYVDLDEARRGLAAAIVAYLEHSRPARR GT:EXON 1|1-211:0| BL:SWS:NREP 1 BL:SWS:REP 9->89|ACRR_SHIFL|6e-06|33.3|81/215| BL:PDB:NREP 2 BL:PDB:REP 18->89|2qopA|1e-05|36.1|72/207| BL:PDB:REP 120->158|2wb5A|8e-04|52.6|38/584| RP:PDB:NREP 1 RP:PDB:REP 18->203|3br5E|9e-12|10.9|183/186| HM:PFM:NREP 2 HM:PFM:REP 23->68|PF00440|9.6e-06|34.8|46/47|TetR_N| HM:PFM:REP 69->137|PF11740|0.001|22.4|67/120|KfrA_N| RP:SCP:NREP 1 RP:SCP:REP 13->86|2fd5A1|3e-09|25.7|74/76|a.4.1.9| HM:SCP:REP 12->88|2gfnA1|5.5e-10|32.5|77/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 14 OP:NHOMOORG 12 OP:PATTERN -------------------------------------------------------------------- --------------111----1--21-----211111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 203 STR:RPRED 96.2 SQ:SECSTR ########cccccccTTcHHHHHHHHHHHHHHHTTTcccHHHHHHHTTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHccccTTTTHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccccHHHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHHHHHHHHTccHHHTTTT DISOP:02AL 1-21, 81-87, 208-211| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccc //