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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56032.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:221 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   54->151 3ccyA PDBj 7e-08 15.3 %
:RPS:SCOP  28->97 1ui5A1  a.4.1.9 * 8e-05 14.3 %
:HMM:SCOP  25->100 2fd5A1 a.4.1.9 * 4.4e-13 26.3 %
:RPS:PFM   95->123 PF08311 * Mad3_BUB1_I 5e-04 41.4 %
:HMM:PFM   36->82 PF00440 * TetR_N 2e-10 31.9 47/47  
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56032.1 GT:GENE BAD56032.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1315177..1315842) GB:FROM 1315177 GB:TO 1315842 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56032.1 LENGTH 221 SQ:AASEQ MARRAVDQERADTVSAPKLWRGQTLDDRSADRREQLLAVGTQLLGTAGAAAVTMRAVTRQAALSPRYFYESFETREDLLRAVYDRVETGLLARVEDVVPSGDLRADVREVVDRCARYFEEDPRRARILLREPLGDDTLHEHSAARAPAFIRALVGLLGAEADALLPADEEALAVQATALGGALIALYLDWADGRLALARDRLAAAAVDIVFALTSVGRARG GT:EXON 1|1-221:0| TM:NTM 3 TM:REGION 36->58| TM:REGION 172->191| TM:REGION 201->218| SEG 35->53|qllavgtqllgtagaaavt| SEG 152->174|alvgllgaeadallpadeealav| SEG 188->206|ldwadgrlalardrlaaaa| RP:PDB:NREP 1 RP:PDB:REP 54->151|3ccyA|7e-08|15.3|98/186| RP:PFM:NREP 1 RP:PFM:REP 95->123|PF08311|5e-04|41.4|29/125|Mad3_BUB1_I| HM:PFM:NREP 1 HM:PFM:REP 36->82|PF00440|2e-10|31.9|47/47|TetR_N| RP:SCP:NREP 1 RP:SCP:REP 28->97|1ui5A1|8e-05|14.3|70/71|a.4.1.9| HM:SCP:REP 25->100|2fd5A1|4.4e-13|26.3|76/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 20 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- --------------111----2--12-----1211122-1-----------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 98 STR:RPRED 44.3 SQ:SECSTR #####################################################HHHHHHHTTccGGGGTTTcccHHHHHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHH###################################################################### DISOP:02AL 1-32, 218-221| PSIPRED ccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccc //