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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56034.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  15/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.47.1
:208 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->78 2qibA PDBj 2e-07 36.5 %
:RPS:PDB   14->206 3c07A PDBj 4e-13 11.4 %
:RPS:SCOP  14->91 2fbqA1  a.4.1.9 * 1e-10 24.4 %
:RPS:SCOP  147->196 1ovnA2  c.47.1.7 * 6e-04 22.4 %
:HMM:SCOP  6->93 1t33A1 a.4.1.9 * 3.6e-13 34.1 %
:RPS:PFM   22->66 PF00440 * TetR_N 5e-04 44.4 %
:HMM:PFM   22->66 PF00440 * TetR_N 3.1e-11 35.6 45/47  
:BLT:SWISS 16->181 Y1255_MYCTU 1e-07 26.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56034.1 GT:GENE BAD56034.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1316711..1317337) GB:FROM 1316711 GB:TO 1317337 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56034.1 LENGTH 208 SQ:AASEQ MARRRGWGGSPPDSDEEATRRIVATAVDLIARTGAEISIADVAESLGVIRQTVYRYFPSAEALMKAAAIASVDGFLDRLAAHVAGLEDPVEAMTEGVVFTLTEVRRTPHLGILITGSYANVHSDGITSEEAKAFGLTMIRRFDVDWERYGYDDESLPELVEYILRTMQSFFVSPGHPPRTEDELRRYLRRWMGSAIIAQTGQRAAPRG GT:EXON 1|1-208:0| BL:SWS:NREP 1 BL:SWS:REP 16->181|Y1255_MYCTU|1e-07|26.2|160/202| BL:PDB:NREP 1 BL:PDB:REP 16->78|2qibA|2e-07|36.5|63/217| RP:PDB:NREP 1 RP:PDB:REP 14->206|3c07A|4e-13|11.4|193/216| RP:PFM:NREP 1 RP:PFM:REP 22->66|PF00440|5e-04|44.4|45/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 22->66|PF00440|3.1e-11|35.6|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 2 RP:SCP:REP 14->91|2fbqA1|1e-10|24.4|78/79|a.4.1.9| RP:SCP:REP 147->196|1ovnA2|6e-04|22.4|49/122|c.47.1.7| HM:SCP:REP 6->93|1t33A1|3.6e-13|34.1|88/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 46 OP:NHOMOORG 15 OP:PATTERN -------------------------------------------------------------------- --------------244----6--32-----154542121----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 206 STR:RPRED 99.0 SQ:SECSTR ccTccc#HHHccccHHHHHHHHHHHHHHHHHHTccTTccHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHTTTHHHHcccHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHTcTTcTTcTTcGGGHHHHHHHHHHHHHHHHTccccccGGGHHHHHHHHHHHHHHcccTTcHHHHHHHHHHHHHHHHHHHHTTcTTTHHT# DISOP:02AL 1-20, 204-208| PSIPRED ccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccc //