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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56039.1
DDBJ      :             putative cytochrome c oxidase subunit I
Swiss-Prot:COX1B_NOCFA  RecName: Full=Probable cytochrome c oxidase subunit 1-beta;         EC=1.9.3.1;AltName: Full=Cytochrome c oxidase polypeptide I-beta;AltName: Full=Cytochrome aa3 subunit 1-beta;

Homologs  Archaea  26/68 : Bacteria  607/915 : Eukaryota  59/199 : Viruses  0/175   --->[See Alignment]
f.24.1
:588 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->536 1m56A PDBj e-133 47.5 %
:RPS:PDB   25->531 3dtuA PDBj 6e-63 24.9 %
:RPS:SCOP  28->531 1ar1A  f.24.1.1 * e-107 46.5 %
:HMM:SCOP  27->540 1ocrA_ f.24.1.1 * 1.1e-181 50.1 %
:RPS:PFM   63->465 PF00115 * COX1 e-101 51.0 %
:HMM:PFM   39->484 PF00115 * COX1 3.8e-163 53.6 440/447  
:BLT:SWISS 1->588 COX1B_NOCFA 0.0 100.0 %
:PROS 261->315|PS00077|COX1_CUB
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56039.1 GT:GENE BAD56039.1 GT:PRODUCT putative cytochrome c oxidase subunit I GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1321550..1323316 GB:FROM 1321550 GB:TO 1323316 GB:DIRECTION + GB:PRODUCT putative cytochrome c oxidase subunit I GB:PROTEIN_ID BAD56039.1 LENGTH 588 SQ:AASEQ MTATPAQRRPALPATRPYPARHGPKGSYLRKMVTTTDPKDLGVLYLVSATGFFLIGGLLALLMRGELARPGLQFLSAEQYNQLFTMHGTIMLLFYATPVVFGFANAVLPLQIGAPDVAFPRLNAFSYWLYLFGATMATAGFLTPGGAADFGWTAYTPLSLSEHSPGVGADLWILGLAVSGLGTILGAVNMITTVVCLRAPGMTMFRMPIFTWNILITSILVLLAFPILTAALMALAYDRHLGGHIYDPANGGAILYQHLFWFFGHPEVYIIALPFFGIISEVIPVFSRKPIFGYTALVYATLAIAALSMAVWAHHMYATGAVLLPFFSMMTFLIAVPTGVKFFNWIGTMWKGQITFETPMLFAIGFIVTFLLGGLSGVILASPPLDWHVTDSYFVVAHFHYVLFGTIVFATFAGIYFWFPKLTGRFMDERLGRLHFWTTFLGFHLTFLVQHWLGNEGMPRRYADYLPSDGFTGLNTVSTIGSFLLGISMVTFVWNGFKSFRYGEVVTVDDPWGAGNSLEWATTCPPPRHNFYELPRIRSERPAFELHYPHMAERMRAEAHAGRRAGHGAGAELSVPSTVATKDDDHTS GT:EXON 1|1-588:0| SW:ID COX1B_NOCFA SW:DE RecName: Full=Probable cytochrome c oxidase subunit 1-beta; EC=1.9.3.1;AltName: Full=Cytochrome c oxidase polypeptide I-beta;AltName: Full=Cytochrome aa3 subunit 1-beta; SW:GN Name=ctaD2; OrderedLocusNames=NFA_11940; SW:KW Cell membrane; Complete proteome; Copper; Electron transport; Heme;Iron; Membrane; Metal-binding; Oxidoreductase; Respiratory chain;Transmembrane; Transport. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->588|COX1B_NOCFA|0.0|100.0|588/588| GO:SWS:NREP 9 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0022900|"GO:electron transport chain"|Electron transport| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0070469|"GO:respiratory chain"|Respiratory chain| GO:SWS GO:0016021|"GO:integral to membrane"|Transmembrane| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 261->315|PS00077|COX1_CUB|PDOC00074| TM:NTM 10 TM:REGION 45->67| TM:REGION 89->111| TM:REGION 121->143| TM:REGION 173->195| TM:REGION 213->235| TM:REGION 266->287| TM:REGION 291->313| TM:REGION 318->340| TM:REGION 360->382| TM:REGION 393->415| SEG 51->62|gffliggllall| SEG 550->572|hmaermraeahagrraghgagae| BL:PDB:NREP 1 BL:PDB:REP 28->536|1m56A|e-133|47.5|505/547| RP:PDB:NREP 1 RP:PDB:REP 25->531|3dtuA|6e-63|24.9|503/539| RP:PFM:NREP 1 RP:PFM:REP 63->465|PF00115|e-101|51.0|398/423|COX1| HM:PFM:NREP 1 HM:PFM:REP 39->484|PF00115|3.8e-163|53.6|440/447|COX1| GO:PFM:NREP 5 GO:PFM GO:0005506|"GO:iron ion binding"|PF00115|IPR000883| GO:PFM GO:0009055|"GO:electron carrier activity"|PF00115|IPR000883| GO:PFM GO:0009060|"GO:aerobic respiration"|PF00115|IPR000883| GO:PFM GO:0016021|"GO:integral to membrane"|PF00115|IPR000883| GO:PFM GO:0020037|"GO:heme binding"|PF00115|IPR000883| RP:SCP:NREP 1 RP:SCP:REP 28->531|1ar1A|e-107|46.5|501/529|f.24.1.1| HM:SCP:REP 27->540|1ocrA_|1.1e-181|50.1|509/514|f.24.1.1|1/1|Cytochrome c oxidase subunit I-like| OP:NHOMO 1236 OP:NHOMOORG 692 OP:PATTERN 22----6333333337-12-2---41241122-----------------------------1----11 1242111111111131111-151121111112322325342342111111111111111122213222223------------2-----------------222132221--------------11----------22222---14132211111112122222212534211111111211212122---23222222222222222223222222212343221111114221111111111111111111--------------------------------------------------------------------------------------------------2---------------------1-31223111111254364112232112212222221355436344421322254335454211112133333122111111112331212-111111111111111111111111-111111112-1443543333432333444766664445646551144422322222151321131221-------1234211-1---11-1-111-1-1-1111-332222------------1---------1----2212131111221112221212222212321211-31-111111111111111111111111-1111111111111111111111111111111111111111111111----111111111111111112111111121112111---------------1111111---2122222322222222111-11111111----2-----2211133222222221111111-111111----------------------------------------------32- -2------1-----1------------111-11111-------111-1------111-----4-311---1-----3----------------1---11------1------11111-----1-1--1-11--11-----1--11--------1-1--1----2-112--L-15-1-1-------1--4--1--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 512 STR:RPRED 87.1 SQ:SECSTR ########################cccHHHHHTTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccGGGGcccHHHHHHHHTccccGGGccccHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHHHHHTTcccGccccTTTTcTTHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccTTccGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccTTcGGGTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccTTHHHHHHHHHHHHHHTTccGGGGcTTccccHHHHHHHHHHHTHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHTTcHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccccHccGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccTTccGGGGccccccccccccccc#################################################### DISOP:02AL 1-21, 576-588| PSIPRED ccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccccccccEEEEcccccccccccccHHHHHccccccccccccccccccccccccccccccc //