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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56048.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  352/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.37.1d.110.2
:533 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   400->525 1ojlD PDBj 9e-17 39.2 %
:RPS:PDB   398->513 1e3aA PDBj 2e-13 6.9 %
:RPS:PDB   492->531 3e7lC PDBj 1e-08 32.5 %
:RPS:SCOP  43->156 1mkmA2  d.110.2.2 * 5e-07 19.5 %
:RPS:SCOP  286->473 1ksfX3  c.37.1.20 * 8e-09 14.9 %
:RPS:SCOP  444->531 1ntcA  a.4.1.12 * 8e-17 25.0 %
:HMM:SCOP  37->181 1td5A_ d.110.2.2 * 0.00048 23.6 %
:HMM:SCOP  268->476 1ny5A2 c.37.1.20 * 1.2e-17 27.8 %
:HMM:SCOP  444->531 1etoB_ a.4.1.12 * 1.5e-17 38.6 %
:RPS:PFM   488->526 PF02954 * HTH_8 5e-08 59.0 %
:HMM:PFM   488->526 PF02954 * HTH_8 7.1e-16 53.8 39/42  
:HMM:PFM   293->353 PF00004 * AAA 0.00051 26.2 61/130  
:BLT:SWISS 1->530 ACOR_BACSU 1e-20 27.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56048.1 GT:GENE BAD56048.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1333102..1334703) GB:FROM 1333102 GB:TO 1334703 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56048.1 LENGTH 533 SQ:AASEQ MIERRRFREPIARSWRRAALAGLAPDTVLRDVRVVDVDPRSHLLAAAAPVIEELNDRLAETGMCTVLVDREGRVVHRWCGDPRAENIFDDLAIGVGTSLLEEAIGTNALGTALEMRTGIAVHGGEHFAERLRAFSCYGHPIFHPTTRRIEGVLDITVLARSASPLLSPLVAKAVADIEQQLLEGSRISERVLLAAFQTASRRSRPVVAVGDDMFVTNMAASDLLDTSDMALLRNLAGDLSGSTELELELRSGQAVLTAERVPGSRGGVLIYIQPTERRTPRTPTTGAAPVGHVCISGQPGTGRTTAARQHAPQRPYSVLTGGQAIIGGSAAWAEQFASIVRAEQGTLCIDGVDLLPPELIEIVTRHARSGTAPHLVLTCGPLDGLPGHVRALPALCASTVELLPLANRLGELPAIAEAMLAELGADKTHHLTPGALRALGGYWWPGNLSELHAVLERAVRAHAGGAITPADFPAHLAPDGPPRDLARLERAERDAIVAALRGCGGNKVRAAQQLGISRTTLYAKMRTLRIQTY GT:EXON 1|1-533:0| BL:SWS:NREP 1 BL:SWS:REP 1->530|ACOR_BACSU|1e-20|27.8|504/605| SEG 28->40|vlrdvrvvdvdpr| SEG 157->171|vlarsaspllsplva| SEG 274->285|pterrtprtptt| BL:PDB:NREP 1 BL:PDB:REP 400->525|1ojlD|9e-17|39.2|125/297| RP:PDB:NREP 2 RP:PDB:REP 398->513|1e3aA|2e-13|6.9|116/258| RP:PDB:REP 492->531|3e7lC|1e-08|32.5|40/60| RP:PFM:NREP 1 RP:PFM:REP 488->526|PF02954|5e-08|59.0|39/42|HTH_8| HM:PFM:NREP 2 HM:PFM:REP 488->526|PF02954|7.1e-16|53.8|39/42|HTH_8| HM:PFM:REP 293->353|PF00004|0.00051|26.2|61/130|AAA| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 3 RP:SCP:REP 43->156|1mkmA2|5e-07|19.5|113/171|d.110.2.2| RP:SCP:REP 286->473|1ksfX3|8e-09|14.9|188/306|c.37.1.20| RP:SCP:REP 444->531|1ntcA|8e-17|25.0|88/91|a.4.1.12| HM:SCP:REP 37->181|1td5A_|0.00048|23.6|140/0|d.110.2.2|1/1|GAF domain-like| HM:SCP:REP 268->476|1ny5A2|1.2e-17|27.8|205/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 444->531|1etoB_|1.5e-17|38.6|88/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 917 OP:NHOMOORG 353 OP:PATTERN -------------------------------------------------------------------- 264-1---------1------2--13-----1311123B4--4---------121-----1-1-1-3231-------------1----5523-411--------12-2-1------------------1-1-1---1211---------------------------------------------------1-111111111-11111122--11111-11-1--------4--------------------------------------------------------------------------------------------12-12222222-2----------1---2--1-7635-2--11222----422---------413-1---231-1----------------11-1-1-----1--1-----24-----23-33-----------411----2------------------------------1131--11-18887773333377675545338664764--232141--433631---34122--------2-1565-8935694272894-676B7A843C9HDD743-------------------------21111-22111--111111--111111--121---3624-------1--1--3113323323-1332333132132333331222--1--121111111111111121212221--1--1111--111---------1111211-1-------------------------511221322312222132--------------1-----22-1111-1112---------1-11-------------1------------------------------------112 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 46.3 SQ:SECSTR #############################################################################################################################################################################################################################################################################################HTTccccEEEEccTTccHHHHHHHTcTTTTccEEEEEGGGccHHHHHHHHHcccccTTTcEEEEEcGGGccHHHHHHHHHHHHHcEEcccccHHHHHHHTcccHHHHHHHccHHHHHHHHHHcHHHHccHHHHHHTcccccccHHHHHHHHHHHHTTTTTccccHHHHHHHHHHHHHHHcHHHHHHHHHHHcccccTTcccccccGGGcccGGGccccccccGGGGccHTccHHHHHHHTTcccccH# DISOP:02AL 1-5, 33-37, 254-263, 531-533| PSIPRED ccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccEEEEEEcccHHHHHHHHHcccccccccccccccccccEEEEEccccEEEEccHHHHHHccccEEEEcEEEcccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHcccEEEEcccEEEEEHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHcccccccEEEcccccccccHHHHHHccHHHHccccEEEEEcHHcccHHHHHHHHHHHHcccEEEEEEEEccccccEEEEEEEEEEcEEEEEEccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEcHHHccHHHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHccccc //