Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56053.1
DDBJ : putative oxidoreductase
Swiss-Prot:
Homologs Archaea 8/68 : Bacteria 439/915 : Eukaryota 152/199 : Viruses 0/175 --->[See Alignment]
b.43.4
c.25.1
:235 amino acids
:SECSTR
:PSIPRED
:BLT:PDB 26->232 1tvcA PDBj 4e-17 31.3 %
:RPS:PDB 2->233 1cqxA PDBj 1e-35 26.6 %
:RPS:SCOP 2->101 1cneA1 b.43.4.2 * 9e-10 12.1 %
:RPS:SCOP 98->233 1tvcA2 c.25.1.2 * 6e-26 27.4 %
:HMM:SCOP 1->100 1qfjA1 b.43.4.2 * 2e-14 23.4 %
:HMM:SCOP 88->230 1i7pA2 c.25.1.1 * 2.1e-42 43.4 %
:RPS:PFM 15->96 PF08022 * FAD_binding_8 3e-07 35.4 %
:RPS:PFM 110->213 PF00175 * NAD_binding_1 1e-13 40.6 %
:HMM:PFM 110->214 PF00175 * NAD_binding_1 3.3e-23 36.5 104/109
:HMM:PFM 30->80 PF08022 * FAD_binding_8 2.7e-08 26.0 50/105
:BLT:SWISS 3->232 HMP_ERWCT 2e-18 32.0 %
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56053.1
GT:GENE BAD56053.1
GT:PRODUCT putative oxidoreductase
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 1339049..1339756
GB:FROM 1339049
GB:TO 1339756
GB:DIRECTION +
GB:PRODUCT putative oxidoreductase
GB:PROTEIN_ID BAD56053.1
LENGTH 235
SQ:AASEQ MRRPWRIEAVTPERGDATTLTLAPVGHPGIRFAPGQFGWLTVDRSPFAITAHPFSFSSSAEDHDRVAITIKALGDFTATVGDIAPGTRAYLDGPHGVFTPDRNEGPGFVLIAGGVGITPMVSILRTMADRGDRRPFLLLYAVRTVAEQTFDAEIDALSRRLDLTVVLVPQDPPPGWPGESGFVDAALLRRHLPDRHERRQYFICGPAPMVTAVEDALAALDVPAERVHTERFTFV
GT:EXON 1|1-235:0|
BL:SWS:NREP 1
BL:SWS:REP 3->232|HMP_ERWCT|2e-18|32.0|225/396|
BL:PDB:NREP 1
BL:PDB:REP 26->232|1tvcA|4e-17|31.3|201/250|
RP:PDB:NREP 1
RP:PDB:REP 2->233|1cqxA|1e-35|26.6|229/403|
RP:PFM:NREP 2
RP:PFM:REP 15->96|PF08022|3e-07|35.4|79/101|FAD_binding_8|
RP:PFM:REP 110->213|PF00175|1e-13|40.6|101/107|NAD_binding_1|
HM:PFM:NREP 2
HM:PFM:REP 110->214|PF00175|3.3e-23|36.5|104/109|NAD_binding_1|
HM:PFM:REP 30->80|PF08022|2.7e-08|26.0|50/105|FAD_binding_8|
GO:PFM:NREP 2
GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00175|IPR001433|
GO:PFM GO:0055114|"GO:oxidation reduction"|PF00175|IPR001433|
RP:SCP:NREP 2
RP:SCP:REP 2->101|1cneA1|9e-10|12.1|99/114|b.43.4.2|
RP:SCP:REP 98->233|1tvcA2|6e-26|27.4|135/141|c.25.1.2|
HM:SCP:REP 1->100|1qfjA1|2e-14|23.4|94/97|b.43.4.2|1/1|Riboflavin synthase domain-like|
HM:SCP:REP 88->230|1i7pA2|2.1e-42|43.4|143/0|c.25.1.1|1/1|Ferredoxin reductase-like, C-terminal NADP-linked domain|
OP:NHOMO 1234
OP:NHOMOORG 599
OP:PATTERN -----------------------------1--------------1----1-1---1--221------- -21-6-1-111---32234-34--57333333479783B52322-1------123111--533-3326421---------1----1------1-11------1-2-11-----------------111-111-1-1-----------1-211---------------111---------------1-------1111111-11-11--121---1111-1111--------11----------------111---------------------------111---------------------------------------------1-------1-1----------------11--2--1-11----------23--------313251--223131111111-111-45235624-21-11111142214332---2162-12-1111111111511111---------------------------------221--43446446563333444564443239531364--54343-41222137-2341--11--1111111-754--112213112222-------2--1111-2-1-------------------------2221326122221-2122-1322232-23323---12-1------21221111111111111-111121111111211111245432122111111111111111121111111--122222222222---1------11123-33111111-----1--1-------11151665614224344231211----------1132222222112----------1111--1-33-----------------------------------------1----------- ------1-----1111322333236231211112-112121221--332656541-342333133221211-213111--11111111-21232122222211313--11---1-12-12123111-21272-222211221121-1-1-1122-3111----2---------111211F211132283211--23212 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 235
STR:RPRED 100.0
SQ:SECSTR ccEEEEEEEEEEccccEEEEEEEETccccccccTTcEEEEEEEETTTTEEEEEEEEcccccccccEEEEEEccccTTccccHccTTcEEEEccccccccccTTccccEEEEEccccHHHHHHHHHHHTcccccccEEEEEEEccccccHHHHHHHHHHHHcTEEEEEEEccccTTcccTEccccGGGcHHHHccHHTTcEEEEEccHHHHHHHHHHHHHTTccGGGEEEccccHH
PSIPRED ccccEEEEEEEEccccEEEEEEEEccccccccccccEEEEEEEcccccEEEEEEEEccccccccEEEEEEEEcccHHHHHHHcccccEEEEEcccccccccccccccEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHcHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHccccccccEEEEEccHHHHHHHHHHHHHccccHHHEEEEHHccc
//
[GTOP]
