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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56057.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  361/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:310 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   93->294 2ql3A PDBj 5e-31 37.6 %
:RPS:PDB   6->72 3broA PDBj 1e-04 9.0 %
:RPS:PDB   92->310 1al3A PDBj 1e-15 19.4 %
:RPS:SCOP  1->108 1b9mA1  a.4.5.8 * 2e-05 13.1 %
:RPS:SCOP  93->299 1i69A  c.94.1.1 * 3e-24 20.9 %
:HMM:SCOP  4->116 1b9mA1 a.4.5.8 * 9.4e-21 35.8 %
:HMM:SCOP  94->299 1ixcA2 c.94.1.1 * 1.6e-33 27.2 %
:RPS:PFM   95->291 PF03466 * LysR_substrate 2e-11 28.6 %
:HMM:PFM   92->297 PF03466 * LysR_substrate 3.3e-38 28.8 205/209  
:HMM:PFM   6->65 PF00126 * HTH_1 1.1e-18 40.7 59/60  
:BLT:SWISS 6->243 TTUA4_AGRVI 4e-17 27.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56057.1 GT:GENE BAD56057.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1342194..1343126) GB:FROM 1342194 GB:TO 1343126 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56057.1 LENGTH 310 SQ:AASEQ MPGYTLRQLEYFAAVAQARSISAAATALHVTPTAVASALTDLERVLRTQLVVRRKAHGITLTPTGSYLHQRVAGLLREADELERAAAGGGTELVGPLLLGCYSTIAPTVVPLLMEWMREHHPRVDLTVVTGSQAELPQRLLVGGLDLAIGYDIGLPDGLDSVLLYRAPPYAILPTDHPLTRRDTVTIAELAREPMILLDLPPAAQHTLQLFTDVGVEPRIGQRISDFELTRALVARGFGYSVLIQRPAISRSYEGLPIALREIESPSHSGHVLMMWPRQVRLTDRAAALVDFATRHADHLDPRNHHSAPA GT:EXON 1|1-310:0| BL:SWS:NREP 1 BL:SWS:REP 6->243|TTUA4_AGRVI|4e-17|27.8|234/304| SEG 13->27|aavaqarsisaaata| SEG 73->90|agllreadeleraaaggg| BL:PDB:NREP 1 BL:PDB:REP 93->294|2ql3A|5e-31|37.6|197/200| RP:PDB:NREP 2 RP:PDB:REP 6->72|3broA|1e-04|9.0|67/129| RP:PDB:REP 92->310|1al3A|1e-15|19.4|217/237| RP:PFM:NREP 1 RP:PFM:REP 95->291|PF03466|2e-11|28.6|196/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 92->297|PF03466|3.3e-38|28.8|205/209|LysR_substrate| HM:PFM:REP 6->65|PF00126|1.1e-18|40.7|59/60|HTH_1| RP:SCP:NREP 2 RP:SCP:REP 1->108|1b9mA1|2e-05|13.1|107/122|a.4.5.8| RP:SCP:REP 93->299|1i69A|3e-24|20.9|201/206|c.94.1.1| HM:SCP:REP 4->116|1b9mA1|9.4e-21|35.8|106/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 94->299|1ixcA2|1.6e-33|27.2|202/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 882 OP:NHOMOORG 363 OP:PATTERN -------------------------------------------------------------------- -11131-1--12--2------1---5-------23213A7-2-11--1-11-3121----12--2252-31-----------1---------------------1-------------------------------122-1----1--11---------------------------------1-------213222222321222331--22353231112---11111155---------------1------1---------------1----------------------------------------------------1--------------------------1-1--11-1-------------1--1----------234-1-13112111-1-11112-1--1-112-22-3--31214132127-11-23-1--14433333333---1-222-------------------------------231-1A476544767444448845666543B557A54--11245331626264111---112-----------21-----------11--1-1111-------12---------------------------1-31--1-1-----111111-322112--1--------1------35424431221111111-211121112121211111146311-11535354555543443431111-11--1--------------1-----111111123---------------11111121117156456559346451335--------------22222---112323333---1111----------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------2-----------------------------------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 307 STR:RPRED 99.0 SQ:SECSTR ###ccHHHHHHHHHHTccccHHHHHHHHTccHHHHHHHHHHHHHTTTcccEEEcTTccEEEcHHHHHHHHHHHHHHHHHHHHHHHTTcccHccEEEEEEEEcHHHHHHTcHHHHHHHHHHcTEEEEEEEEccHHHHHHHHHTTcccEEEEccccTTccEEEEEEEEEcEEEEEcTTcTTTTTccccHHHHHTcEEEEEcTTcTHHHHHHHHHHHTcccEEEEEEccHHHHHHHHHHTccEEEEEGGGcHHcTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHHHHHHHHHccc DISOP:02AL 88-90, 300-310| PSIPRED cccccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccHHHHcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEccccccccEEEEEEcccEEEEEcccccccccccccHHHHccccEEEEccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHccccEEEHHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccc //