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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56063.1
DDBJ      :             putative regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  91/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.118.8a.4.5a.4.6c.37.1
:772 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   711->765 1zlkA PDBj 1e-08 43.6 %
:RPS:PDB   8->348 2a5yB PDBj 7e-12 11.4 %
:RPS:PDB   667->770 3cloA PDBj 6e-14 21.2 %
:RPS:SCOP  16->111 1qvrA2  c.37.1.20 * 1e-06 27.7 %
:RPS:SCOP  257->343 1bjaA  a.4.5.9 * 1e-04 5.8 %
:RPS:SCOP  432->593 1hz4A  a.118.8.2 * 5e-07 22.9 %
:RPS:SCOP  709->770 1a04A1  a.4.6.2 * 1e-15 40.3 %
:HMM:SCOP  8->231 1w5sA2 c.37.1.20 * 2.1e-12 25.4 %
:HMM:SCOP  424->593 1qqeA_ a.118.8.1 * 7.1e-07 20.6 %
:HMM:SCOP  689->770 1p4wA_ a.4.6.2 * 1.2e-17 34.1 %
:RPS:PFM   33->214 PF00931 * NB-ARC 4e-05 30.5 %
:RPS:PFM   710->765 PF00196 * GerE 7e-11 48.2 %
:HMM:PFM   709->765 PF00196 * GerE 1e-18 40.4 57/58  
:HMM:PFM   19->226 PF00931 * NB-ARC 2.5e-08 24.9 185/285  
:HMM:PFM   447->471 PF07721 * TPR_4 2.7e-05 40.0 25/26  
:HMM:PFM   284->320 PF08029 * HisG_C 0.00029 32.4 37/75  
:BLT:SWISS 12->345 Y918_MYCBO 3e-38 32.1 %
:BLT:SWISS 697->770 NREC_STAAW 3e-09 33.8 %
:PROS 725->752|PS00622|HTH_LUXR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56063.1 GT:GENE BAD56063.1 GT:PRODUCT putative regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1348753..1351071 GB:FROM 1348753 GB:TO 1351071 GB:DIRECTION + GB:PRODUCT putative regulator GB:PROTEIN_ID BAD56063.1 LENGTH 772 SQ:AASEQ MSAGAGQLPARMTSFIGRDDELTAVRDALARFRLVSLVGPGGVGKTRLGIEAARPLAAEVPGGAWFVPLAHLTDPADVAQAVASALGAKFSSPDVVDHLIAALADREILIVLDNCEHVVSGCQVFVGRVLRAAPGVRFLVTSRQALGITGERVLAVRTLGAPASGTVLRVEDAAAYPAIRLLDERAGAVSAHHRITEENVELAAQLVRRLDGLPLAIELAAARLRSLSLAELLARITDRFRVLAGGDPTDLPQHRTLWALVEWSHGLCLPEEQQLWARMSVFVGSADLAAVEAVCADDDAVEVVNALDGLVAKSILVTETTPCGLRYRMLESIAEYGRRRLRESGAEEQLRRRHREHYRRVAEQVGTAFWGPDQARMLACLTAELPNFAAAFDSFLGDEDERARRHALTLAARLRILWVMGGHLQEGRRRLDRALAAHPAACAERVEALWSCAWVALLQGDHDGARERLAECGALDAVAGPHTRSFVATWQGSLALFGGDLETAAARFSEAAAGHRADGSVEGLLMSLFQLALTRTLLGDHAEAARCCAEAMTAGTTTGDRWARGYALWVRAHLAVAEDRVDEAITAAAQSLESSLPLDNHIAVVLVLEVLATASVAAARHREGATLLGIADAFWRRIGTALSAFGPQLARAHEDAAHRAVAALGADAFDEAYREGSGFGDEQVRAYLAALTRTHGTERDRSATPTGAHALTRRERQVAALVGKGLSNRDIAGELVLSHRTVEGHVEHVLAKLGFRSRTEIAVWAATRDLDA GT:EXON 1|1-772:0| BL:SWS:NREP 2 BL:SWS:REP 12->345|Y918_MYCBO|3e-38|32.1|321/393| BL:SWS:REP 697->770|NREC_STAAW|3e-09|33.8|74/217| PROS 725->752|PS00622|HTH_LUXR_1|PDOC00542| SEG 215->236|laielaaarlrslslaellari| SEG 286->308|adlaaveavcadddavevvnald| SEG 351->360|rrrhrehyrr| SEG 402->417|rarrhaltlaarlril| SEG 504->517|aaarfseaaaghra| SEG 603->619|avvlvlevlatasvaaa| SEG 650->663|arahedaahravaa| BL:PDB:NREP 1 BL:PDB:REP 711->765|1zlkA|1e-08|43.6|55/65| RP:PDB:NREP 2 RP:PDB:REP 8->348|2a5yB|7e-12|11.4|325/501| RP:PDB:REP 667->770|3cloA|6e-14|21.2|104/249| RP:PFM:NREP 2 RP:PFM:REP 33->214|PF00931|4e-05|30.5|167/241|NB-ARC| RP:PFM:REP 710->765|PF00196|7e-11|48.2|56/57|GerE| HM:PFM:NREP 4 HM:PFM:REP 709->765|PF00196|1e-18|40.4|57/58|GerE| HM:PFM:REP 19->226|PF00931|2.5e-08|24.9|185/285|NB-ARC| HM:PFM:REP 447->471|PF07721|2.7e-05|40.0|25/26|TPR_4| HM:PFM:REP 284->320|PF08029|0.00029|32.4|37/75|HisG_C| GO:PFM:NREP 6 GO:PFM GO:0005524|"GO:ATP binding"|PF00931|IPR002182| GO:PFM GO:0006915|"GO:apoptosis"|PF00931|IPR002182| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 4 RP:SCP:REP 16->111|1qvrA2|1e-06|27.7|94/357|c.37.1.20| RP:SCP:REP 257->343|1bjaA|1e-04|5.8|86/95|a.4.5.9| RP:SCP:REP 432->593|1hz4A|5e-07|22.9|157/366|a.118.8.2| RP:SCP:REP 709->770|1a04A1|1e-15|40.3|62/67|a.4.6.2| HM:SCP:REP 8->231|1w5sA2|2.1e-12|25.4|224/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 424->593|1qqeA_|7.1e-07|20.6|170/290|a.118.8.1|1/1|TPR-like| HM:SCP:REP 689->770|1p4wA_|1.2e-17|34.1|82/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 327 OP:NHOMOORG 91 OP:PATTERN -------------------------------------------------------------------- -1--A--------1---55-5-117-5555532---33MG-31A-4--11-32221-1--542-35I69G4-----------1---------------------------------------------------1-23321---I-1--1---------------11--1-------------4------------------------------------------------1--------------------------------------1-------------------------------------------------------------------------------1-----------------------11---------18-1--------------------------1--2------1-15211------------------------------------------------------------------------333-323------34------132------------------4-------------------------------------------------1-11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------142-------1-------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 446 STR:RPRED 57.8 SQ:SECSTR #######TccccccccccHHHHHHHHHHHHccEEEEEEccTTccHHHHHHHHHHHcccTcTTTccEEEEEEcccTTHHHHHHHHHHHHHTTTcccTTHHHHHHHHHHHHTTcTTEEEEEEEEccHHHHHHHHHTTcEEEEEEccEEEEEEGGGGGGccccEEEEEcccccHHHHHHHHHHHHHHTccccccHHHccHHHHHHHHHHHHHHTTcHHHHHHHHTTcccccHHHHHHHHHHHHHHcccTTcccccccccHHHHHHHHHHTccHHHHHHTTGGGcccTTccEEHHHHHHHccccccTHHHHHHTTTcccccEEEcccccEEEccHHHHHHHHTTccTHHHHH##############################################################################################################################################################################################################################################################################################################################TTccEEEEEEEEEEccccccccccccEEEETTTEEEEcccHHHHccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccHHHHHHHHHHTccc# DISOP:02AL 1-5| PSIPRED ccccccccccccccccccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccc //