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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56068.1
DDBJ      :             putative dehydrogenase
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  602/915 : Eukaryota  184/199 : Viruses  0/175   --->[See Alignment]
b.35.1c.2.1e.60.1
:361 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   16->359 1hdyA PDBj 1e-37 30.2 %
:RPS:PDB   2->359 1a71A PDBj 1e-51 24.0 %
:RPS:SCOP  3->187 1f8fA1  b.35.1.2 * 6e-23 23.0 %
:RPS:SCOP  170->349 1zjcA1  e.60.1.1 * 2e-10 9.7 %
:HMM:SCOP  3->186 1dehA1 b.35.1.2 * 6.4e-60 41.3 %
:HMM:SCOP  152->326 1m6hA2 c.2.1.1 * 4.2e-47 38.7 %
:HMM:SCOP  309->361 1e3iA1 b.35.1.2 * 7.1e-10 39.6 %
:RPS:PFM   30->87 PF08240 * ADH_N 3e-06 44.8 %
:RPS:PFM   210->282 PF00107 * ADH_zinc_N 4e-12 49.3 %
:HMM:PFM   29->148 PF08240 * ADH_N 5.1e-32 40.2 107/109  
:HMM:PFM   190->319 PF00107 * ADH_zinc_N 9.4e-31 37.6 125/130  
:BLT:SWISS 2->360 FADH_AMYME e-168 80.2 %
:PROS 62->76|PS00059|ADH_ZINC
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56068.1 GT:GENE BAD56068.1 GT:PRODUCT putative dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1355164..1356249) GB:FROM 1355164 GB:TO 1356249 GB:DIRECTION - GB:PRODUCT putative dehydrogenase GB:PROTEIN_ID BAD56068.1 LENGTH 361 SQ:AASEQ MPQQVRGVIARSTGAPVEITDIVIPDPGPGEVVVAVAACGVCHTDLTYREGGINDEFPFLLGHEAAGTVESVGPGVDSVQPGDFVVLNWRAVCGRCRACRRGRPQYCFDTFNAEQKMTLLDGTELTPALGIGAFAEKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGGVSRGDSVAVIGCGGVGDAAIAGARLAGAATIIAVDRDPRKLVWATELGATHTVDASQVDAVAAIQDLTGGFGADVVIDAVGRPETWKQAFYARDLAGTVVLVGVPTPDMRLEMPLIDFFSRGGALKSSWYGDCLPERDFPYLVDLYLQGRLPLEKFVTERIGLEDVEKAFHTMHAGEVLRSVVIL GT:EXON 1|1-361:0| BL:SWS:NREP 1 BL:SWS:REP 2->360|FADH_AMYME|e-168|80.2|359/360| PROS 62->76|PS00059|ADH_ZINC|PDOC00058| SEG 32->38|vvvavaa| SEG 90->103|ravcgrcracrrgr| SEG 192->209|gdaaiagarlagaatiia| BL:PDB:NREP 1 BL:PDB:REP 16->359|1hdyA|1e-37|30.2|341/374| RP:PDB:NREP 1 RP:PDB:REP 2->359|1a71A|1e-51|24.0|358/374| RP:PFM:NREP 2 RP:PFM:REP 30->87|PF08240|3e-06|44.8|58/108|ADH_N| RP:PFM:REP 210->282|PF00107|4e-12|49.3|73/128|ADH_zinc_N| HM:PFM:NREP 2 HM:PFM:REP 29->148|PF08240|5.1e-32|40.2|107/109|ADH_N| HM:PFM:REP 190->319|PF00107|9.4e-31|37.6|125/130|ADH_zinc_N| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF08240|IPR013154| GO:PFM GO:0008270|"GO:zinc ion binding"|PF00107|IPR013149| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00107|IPR013149| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00107|IPR013149| RP:SCP:NREP 2 RP:SCP:REP 3->187|1f8fA1|6e-23|23.0|183/188|b.35.1.2| RP:SCP:REP 170->349|1zjcA1|2e-10|9.7|175/413|e.60.1.1| HM:SCP:REP 3->186|1dehA1|6.4e-60|41.3|184/0|b.35.1.2|1/1|GroES-like| HM:SCP:REP 152->326|1m6hA2|4.2e-47|38.7|173/0|c.2.1.1|1/1|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 309->361|1e3iA1|7.1e-10|39.6|53/227|b.35.1.2|2/2|GroES-like| OP:NHOMO 2270 OP:NHOMOORG 810 OP:PATTERN 11----2222222243-311-21-6-----21----------------------1-1---------12 1221621311311256555-57119G5555565BCB8BHH-5345244-11252522211116274B6783-111-1-----6-1-----1----------1-1-1------------------------------12211---152125111--11---12-12-322111----1------211111--31311111122223211222331311242-221233323121-1111111121111221232--3--1-3---113311211-1-1111111111211222222222222221221221222211---111--1--1111111111-23----1---11-1------1-1--1-1---1--14-25444-----446593123212233323332225--1212413135-56629A86586A332513333244535222222222332--11------------------------------36332111134444432323233683333153242453--33613233231113221-1--21112222221232-21-------------11--1-111224233-2-------------------------22111332215311111112211111221111---11--------1213-143223332332-23332333222323333323331311122213232243121133-1111-1--111111111111---1-----1---111442222-1--111-11-111-3-311111334325222343221121--1-1----1222-----111111252422222----------1111-----------------3---1-------------------1-1---1- ----513-21--1218875736595862223342233453234343745757AB5625221333124122141222222221111131-14182322231312121-131-5747844223382782I1Gi9-B7F534442263334-225384A37B12213331125-23-111229111-16AMO4DB3341312 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 361 STR:RPRED 100.0 SQ:SECSTR ccEEEEEEEcccTTcccEEEEEEEccccTTEEEEEEEEEEccHHHHHHHHTcccccccccccccEEEEEEEEcTTcccccTTcEEEEcccccccccHHHHcccccccTTccccccccccTTccccEEETTTcccccEEEEEGGGEEEccTTccHHHHGGGGTHHHHHHHHHHTTTcccTTcEEEEEcccHHHHHHHHHHHHTTccEEEEEcccGGGHHHHHHHTccEEEcGGGcccHHHHHHHHTTccccEEEEccccHHHHHHHHHHccTTTcEEEEcccccTTccccccTHHHHTTcEEEEccGGGccHHHHHHHHHHHHHTTccccGGGEEEEEEGGGHHHHHHHHHTTcccEEEEEc PSIPRED ccEEEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEEEcccccHHHcccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccHHHcccccccccccccccccccccccccccccccccccEEEEEEcHHHEEEccccccHHHcccccccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHcccEEEccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHHHccccEEEEEcccccccEEEEcHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEEHHHHHHHHHHHHcccccEEEEEc //