[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56069.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  24/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.6d.122.1
:433 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   355->405 1yioA PDBj 1e-07 45.1 %
:RPS:PDB   321->369 2bu2A PDBj 2e-04 8.2 %
:RPS:PDB   349->408 3cloA PDBj 1e-13 26.7 %
:RPS:SCOP  225->347 2c2aA2  d.122.1.3 * 3e-04 14.6 %
:RPS:SCOP  358->408 1fseA  a.4.6.2 * 1e-11 39.2 %
:HMM:SCOP  221->346 1b3qA3 d.122.1.3 * 1.2e-07 20.6 %
:HMM:SCOP  339->425 1p4wA_ a.4.6.2 * 2.5e-16 37.9 %
:RPS:PFM   37->86 PF11951 * DUF3468 8e-04 44.4 %
:RPS:PFM   361->408 PF00196 * GerE 2e-09 52.1 %
:HMM:PFM   360->413 PF00196 * GerE 2.7e-18 48.1 54/58  
:BLT:SWISS 352->405 CARR_PECCC 5e-07 46.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56069.1 GT:GENE BAD56069.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1356398..1357699 GB:FROM 1356398 GB:TO 1357699 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56069.1 LENGTH 433 SQ:AASEQ MTRSAHPACDHARDQLAAVRAVIEGPLGEIARRLSRHLAEGWPHRALVVFTRECTGRPRKVAGPPDLVDVVTIDELDALKDTVPPGGWASTVGRFAGAPRPLWLVRDAIGTLLVLVPRAERELPSPHQLAAIFGLVAVSIRQQVTQAGPDYLAESRAASSERARATAELTAAHEAALAGILATLRAPNLDDGRARGIAAAAASEALLAVRAAQSADRSLAEESPAAAFARLREEIVPLLRDRDLAVEFVAPPPTSRPIPGEVASGARAMAHAVVLAFLNRCGSRLRIAWECDDDALVMDLRDQGEGLDDLDGLRRRLHGRVAALAARADYESVPGWGSRVTVRIPLEPPAAPGDQSLLAGLNRRQREVLALVCAGMRNKAIARELGLAESTVKFHVAGVLKKLGVATRGEAAALGLRAAAAGGRPAVAVAESG GT:EXON 1|1-433:0| BL:SWS:NREP 1 BL:SWS:REP 352->405|CARR_PECCC|5e-07|46.3|54/244| SEG 153->183|aesraasserarataeltaaheaalagilat| SEG 193->212|rargiaaaaaseallavraa| SEG 299->320|dlrdqgeglddldglrrrlhgr| SEG 409->431|geaaalglraaaaggrpavavae| BL:PDB:NREP 1 BL:PDB:REP 355->405|1yioA|1e-07|45.1|51/198| RP:PDB:NREP 2 RP:PDB:REP 321->369|2bu2A|2e-04|8.2|49/358| RP:PDB:REP 349->408|3cloA|1e-13|26.7|60/249| RP:PFM:NREP 2 RP:PFM:REP 37->86|PF11951|8e-04|44.4|45/228|DUF3468| RP:PFM:REP 361->408|PF00196|2e-09|52.1|48/57|GerE| HM:PFM:NREP 1 HM:PFM:REP 360->413|PF00196|2.7e-18|48.1|54/58|GerE| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00196|IPR000792| GO:PFM GO:0005622|"GO:intracellular"|PF00196|IPR000792| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00196|IPR000792| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00196|IPR000792| RP:SCP:NREP 2 RP:SCP:REP 225->347|2c2aA2|3e-04|14.6|123/151|d.122.1.3| RP:SCP:REP 358->408|1fseA|1e-11|39.2|51/67|a.4.6.2| HM:SCP:REP 221->346|1b3qA3|1.2e-07|20.6|126/185|d.122.1.3|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| HM:SCP:REP 339->425|1p4wA_|2.5e-16|37.9|87/0|a.4.6.2|1/1|C-terminal effector domain of the bipartite response regulators| OP:NHOMO 27 OP:NHOMOORG 24 OP:PATTERN -------------------------------------------------------------------- ------------------------------------1132---------11-1-1---------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1---11--------------1--------------------------------------------------------------------------------1111--111-1----------1----------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 88 STR:RPRED 20.3 SQ:SECSTR ################################################################################################################################################################################################################################################################################################################################HHHTTcEEEEEEETTEEEEEEEEEEcccEEcccHHHHTTcccHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHHHHHHHTTcccH######################### DISOP:02AL 1-8, 342-361, 420-433| PSIPRED ccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccc //