[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56074.1
DDBJ      :             putative amino acid transporter
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  467/915 : Eukaryota  120/199 : Viruses  0/175   --->[See Alignment]
:488 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->271 3hqkA PDBj 1e-07 29.4 %
:RPS:PFM   20->424 PF00324 * AA_permease 8e-48 35.8 %
:HMM:PFM   16->449 PF00324 * AA_permease 8.4e-110 36.7 430/479  
:BLT:SWISS 8->426 PROY_SALTY e-112 50.8 %
:PROS 41->71|PS00218|AMINO_ACID_PERMEASE_1
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56074.1 GT:GENE BAD56074.1 GT:PRODUCT putative amino acid transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1365574..1367040) GB:FROM 1365574 GB:TO 1367040 GB:DIRECTION - GB:PRODUCT putative amino acid transporter GB:PROTEIN_ID BAD56074.1 LENGTH 488 SQ:AASEQ MNQTADVLTRGLTARHIRFIALGSAIGTGLFYGSAEAIHRAGPAVLLAYLIGGAAIYIVLRSLGEMAVSNPVSGSFGEYASKHLGPLAGFMTGWTYTFEMVIVCLADVTAFGVYMGFWFPDVPRWIWVLSIILFIGAVNLLHVKVFGEVEFWFSLVKIVAILAMIVGGVAILIFGFGMHDTDAGLTHLWAEGGFFATGIGGFLTCFAIVMFAFGGTEIIGITAGEAERPERTIPRAINTVPVRIMLFYVLTLAVIMAINPWQSIGSEGSPFVQIFQALGIGPAATVLNIVVITAALSAINSDIFGAGRMMYGMAQRGQAPAVMRQVSRNGVPWMTVVIMTVTLLVGVLLNYLIPDKVFLIIASIATFATIFVWLMILLAHYRSRRRMSAEETAALRFPVPFWPYGQLITIAFLVFVVAMIAFDADSRVALVVGAVWLALLWLAYRRWVRPTPAATDAAPVAGPGTDPADPADPALTTPTPRIEMEKNL GT:EXON 1|1-488:0| BL:SWS:NREP 1 BL:SWS:REP 8->426|PROY_SALTY|e-112|50.8|419/456| PROS 41->71|PS00218|AMINO_ACID_PERMEASE_1|PDOC00191| TM:NTM 11 TM:REGION 12->34| TM:REGION 42->64| TM:REGION 96->118| TM:REGION 123->145| TM:REGION 154->176| TM:REGION 199->221| TM:REGION 240->262| TM:REGION 278->300| TM:REGION 330->352| TM:REGION 358->380| TM:REGION 415->437| SEG 211->227|fafggteiigitageae| SEG 335->352|tvvimtvtllvgvllnyl| SEG 360->371|iiasiatfatif| SEG 427->480|rvalvvgavwlallwlayrrwvrptpaatdaapvagpgtdpadpadpalttptp| BL:PDB:NREP 1 BL:PDB:REP 17->271|3hqkA|1e-07|29.4|235/418| RP:PFM:NREP 1 RP:PFM:REP 20->424|PF00324|8e-48|35.8|399/429|AA_permease| HM:PFM:NREP 1 HM:PFM:REP 16->449|PF00324|8.4e-110|36.7|430/479|AA_permease| GO:PFM:NREP 3 GO:PFM GO:0006810|"GO:transport"|PF00324|IPR004841| GO:PFM GO:0016020|"GO:membrane"|PF00324|IPR004841| GO:PFM GO:0055085|"GO:transmembrane transport"|PF00324|IPR004841| OP:NHOMO 3685 OP:NHOMOORG 601 OP:PATTERN ------2-11111--------------11-----1-----------11--111--------------- 2112152333424261144-422285444443-22228EE----2-31122298A824--1--A11A854-4222444-----------------------1------1------------------------------------1---------------------------------------------5-C8898979A79C899B21889C99953591712222228255555555555555466677246255294456666433556516662221111-22-----------1111111111111-212221111---44111111111--1441111----------2212--1-11--2------14--134334----1----1---1-111111112------21-----111-121--1--1--------------55555555-2231-----------------------------------112211-1AFFDFB47675BB33999949F927555-1333-12--71-111------151-------1-------------4--------------------------1-------3-1112111---1---1331--1--------------11-1--1--1------------9977796A998A88899-99B9988989989999998EEE8A7749899999999999899C99888894-988788788888--3-111111321---2----------------HHIIFB9-----CDBDBD7B-HKGD1444433333333-----11111-----2243533444----------------------1----------------------------1----------- -----1------322HGCBKGEDLNNNAB9889DEECDCCDAEA9AIIGHOUgbBDGA9ABBFKOEGJ4LEEMDNGHAHIDJJKPLC8-6I4G6AC6473958879----3---1----------1------------------------------122134-221-3--41------------13222B1---2241- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 306 STR:RPRED 62.7 SQ:SECSTR ################HHHHHHHTTcTTHHHHHHHHHTTcccTTHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc#####ccccccHHHHHHHHHHHHHTTTcTHHHHHHHccHHHHHHTTTTHHHHTcccHcc###cccccccccccccTTHHHHHHHHHHHHHGGGTTHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHccccccGGGccccccccTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccGGGccccccc############################################################################################################################################################## DISOP:02AL 1-6, 8-11, 487-488| PSIPRED ccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHcccccccccHHHccccccccHHHHcccc //