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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56077.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  182/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:221 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->216 1mkmB PDBj 3e-12 27.7 %
:RPS:PDB   12->86 2d1hA PDBj 3e-06 14.7 %
:RPS:PDB   81->216 3d3oA PDBj 5e-15 15.9 %
:RPS:SCOP  9->77 1mkmA1  a.4.5.33 * 5e-12 27.5 %
:RPS:SCOP  81->216 1td5A  d.110.2.2 * 5e-17 22.1 %
:HMM:SCOP  7->80 1mkmA1 a.4.5.33 * 3.4e-14 37.8 %
:HMM:SCOP  63->219 1tf1A_ d.110.2.2 * 6e-27 36.9 %
:RPS:PFM   144->193 PF01614 * IclR 2e-05 50.0 %
:HMM:PFM   149->210 PF01614 * IclR 2.3e-10 43.5 62/129  
:HMM:PFM   9->55 PF09339 * HTH_IclR 2.9e-11 34.0 47/52  
:BLT:SWISS 5->216 KDGR_ECOLI 3e-17 28.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56077.1 GT:GENE BAD56077.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1369662..1370327 GB:FROM 1369662 GB:TO 1370327 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56077.1 LENGTH 221 SQ:AASEQ MAPGDVTRSVSRTFELLGAIIEHGGLTLADAAKATELAPSTALRLIRSLEQTEFVLRGEDNVYRVGPRLLQIGARAIADHQLVLRARPAMAAIAETTRESTYLSAPGPRGTALYIDQIQGTYAIRHMGWVGQTVPLVGTAVGAALLGEVGPQGYAVAHDTIEEHSTGVAAPIHDAIGRVAGALSVVGPTFRLDDETCARHGRVLVEHCARLSAELGRTSPD GT:EXON 1|1-221:0| BL:SWS:NREP 1 BL:SWS:REP 5->216|KDGR_ECOLI|3e-17|28.4|211/263| BL:PDB:NREP 1 BL:PDB:REP 9->216|1mkmB|3e-12|27.7|206/247| RP:PDB:NREP 2 RP:PDB:REP 12->86|2d1hA|3e-06|14.7|75/98| RP:PDB:REP 81->216|3d3oA|5e-15|15.9|132/167| RP:PFM:NREP 1 RP:PFM:REP 144->193|PF01614|2e-05|50.0|50/127|IclR| HM:PFM:NREP 2 HM:PFM:REP 149->210|PF01614|2.3e-10|43.5|62/129|IclR| HM:PFM:REP 9->55|PF09339|2.9e-11|34.0|47/52|HTH_IclR| RP:SCP:NREP 2 RP:SCP:REP 9->77|1mkmA1|5e-12|27.5|69/75|a.4.5.33| RP:SCP:REP 81->216|1td5A|5e-17|22.1|136/179|d.110.2.2| HM:SCP:REP 7->80|1mkmA1|3.4e-14|37.8|74/0|a.4.5.33|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 63->219|1tf1A_|6e-27|36.9|149/0|d.110.2.2|1/1|GAF domain-like| OP:NHOMO 242 OP:NHOMOORG 184 OP:PATTERN ------------------------1-----1------------------------------------- --1------------11----1---4------1---1147-11-1-2-----221111--11--11611-------------1------------------------------------------------------------------------------------------------------11111---------1------1---2--1----112-1--------1------------------------------------------------------------------------------------------------------------------------------------1----------------------1----1-1-1------------------1--12---111--1-----2------1------1---------11-------------------------------------2-------1223212222222232222122112241--22---1--2-1-31-------------------1----------------------1----------------------------------------1-------------------------------1-1------1111-1-1111111111-111111111111111111112111---1111111111111111111111111-111111111111-----------------1---1-----------------------------------------------------1------1-12------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 212 STR:RPRED 95.9 SQ:SECSTR ####cccHccHHHHHHHTHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEEEEEETTEEEEEEEEccccTTTccHHHHHHHHHHHHHHHHccEEEEEEEEcTTEEEEEEEEcccccccccccTTccccGGcHHHHHTTcHHHHHHcEEEEEccccTTEEEEEEEEEEETTEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTccc##### DISOP:02AL 1-5, 219-221| PSIPRED ccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEcccccEEEEEcccccccccccHHHHHHHHHHcccccEEEccccccccEEEEEEEEcccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccc //