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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56078.1
DDBJ      :             putative transporter
Swiss-Prot:             

Homologs  Archaea  7/68 : Bacteria  126/915 : Eukaryota  78/199 : Viruses  0/175   --->[See Alignment]
:488 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->411 2jloA PDBj 1e-10 22.8 %
:RPS:PFM   31->428 PF02133 * Transp_cyt_pur 3e-26 33.2 %
:HMM:PFM   31->453 PF02133 * Transp_cyt_pur 2.3e-58 21.4 415/439  
:BLT:SWISS 21->466 YXLA_BACSU 5e-89 37.1 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56078.1 GT:GENE BAD56078.1 GT:PRODUCT putative transporter GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1370486..1371952 GB:FROM 1370486 GB:TO 1371952 GB:DIRECTION + GB:PRODUCT putative transporter GB:PROTEIN_ID BAD56078.1 LENGTH 488 SQ:AASEQ MHSPQKVRPAMKNDGTAEDILTLERRTIDVVPDSERHGTPRSQFTLWFGANMQITAIVDGALAVVFGADALWAIIGLLIGNVFGGAVMALHSAQGPRMGLPQMISSRAQFGVKGAVIPLVMVILMYLGFAATGTVLAGQAVNKVLGIDSPTVGILIFGGLTAFVAITGYRLIHMVGRVATVVGIVGFTYLAIRLFAEYPVADYVGIVDFDVVTFLLAISLSAGWQLTFGPYVADYSRYLPRSTSERTTFWSTFLGSVIGSQWSMTFGALVAAVAGDAFLGNQVGFMGDLAGPAAVAFLIYLVIVVGKLTVNVLNAYGGFMSILTTVTAFNGRSHISTTARTLYILGFVGVSMLIAIAASADFLENFKNFVLVLLMVFTPWSAINLIDYYLISKERIDLPALYDPNGRYGAWNTPAMICYALGVVAQIPFLAQKMYTGPVTEMLGGADISWIVGILFTGAIYYPIAKRTNNPPAQMIYPTHTEMVDTRL GT:EXON 1|1-488:0| BL:SWS:NREP 1 BL:SWS:REP 21->466|YXLA_BACSU|5e-89|37.1|439/457| TM:NTM 12 TM:REGION 62->84| TM:REGION 114->136| TM:REGION 146->168| TM:REGION 173->195| TM:REGION 201->223| TM:REGION 250->272| TM:REGION 282->304| TM:REGION 309->331| TM:REGION 339->361| TM:REGION 369->391| TM:REGION 413->435| TM:REGION 444->465| BL:PDB:NREP 1 BL:PDB:REP 34->411|2jloA|1e-10|22.8|359/461| RP:PFM:NREP 1 RP:PFM:REP 31->428|PF02133|3e-26|33.2|388/425|Transp_cyt_pur| HM:PFM:NREP 1 HM:PFM:REP 31->453|PF02133|2.3e-58|21.4|415/439|Transp_cyt_pur| GO:PFM:NREP 4 GO:PFM GO:0015205|"GO:nucleobase transmembrane transporter activity"|PF02133|IPR001248| GO:PFM GO:0015931|"GO:nucleobase, nucleoside, nucleotide and nucleic acid transport"|PF02133|IPR001248| GO:PFM GO:0016020|"GO:membrane"|PF02133|IPR001248| GO:PFM GO:0055085|"GO:transmembrane transport"|PF02133|IPR001248| OP:NHOMO 416 OP:NHOMOORG 211 OP:PATTERN ------------------------------------------------------111---1111---- ---31---------1------1---6------31111157----1-1-----212--1----1211321-1-----------2---------------------------------------------------------1--------------------------------------------------1-1--------------------1-----------------------------------1----2----1---1211--1----------------------------------------------------------------1-1--11--------------11-1---------------------------1------------------------------1-----------1----------1-------222222223111--------------------------------------------3112323111-77311111-162--1----------------1-1------1----------------------------------------------------------------------------------------------------------------------211-1-------------------2----------11111---------------------------1-2---------------------------1---------------12221211-----43444566-4544---1-------------------11-1-----------------------------------------------------------------------1-- ---------------531115412322--1111121-------1-1122323331121-1221211-2113231223133223232---493323732212-1------------------------------------------------------------------------------------1-4----2122- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 359 STR:RPRED 73.6 SQ:SECSTR #################################GGccccHHHHHHHHTGGGccHHHHH##HHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHTTcccHHHHTTTTccTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTHHH######HHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTcccccHHHHHHHHHHHHH###HHHHHHHHHHHHHHHHHHccccHHHHHHHHHTcccHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHTcc###TTTccHHHHHHHHHHHHHTTc#####GGGTTTTccccTTTcccccHHHHHHHHHHHHTTTTTcccHHHHTccccTTccT############################################################################# DISOP:02AL 1-22| PSIPRED ccccccccccccccccHHHHHcccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEccHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHccccccHHHHcccc //