[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56082.1
DDBJ      :             putative indolepyruvate ferredoxin oxidoreductase alpha subunit
Swiss-Prot:             

Homologs  Archaea  47/68 : Bacteria  112/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.36.1d.58.1
:720 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   28->604 3ea4A PDBj 3e-22 11.6 %
:RPS:PDB   619->699 1bluA PDBj 4e-07 15.1 %
:RPS:SCOP  28->196 1powA2  c.36.1.5 * 9e-11 13.5 %
:RPS:SCOP  409->590 1upaA3  c.36.1.9 * 1e-12 14.8 %
:RPS:SCOP  619->693 1jb0C  d.58.1.2 * 8e-07 23.2 %
:HMM:SCOP  17->278 1b0pA1 c.36.1.8 * 3e-33 20.9 %
:HMM:SCOP  389->634 1b0pA2 c.36.1.12 * 4.2e-28 23.3 %
:HMM:PFM   440->584 PF02775 * TPP_enzyme_C 7.1e-19 28.9 135/150  
:HMM:PFM   28->185 PF02776 * TPP_enzyme_N 6.4e-05 21.3 150/172  
:BLT:SWISS 18->666 IORA_METTH 2e-43 31.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56082.1 GT:GENE BAD56082.1 GT:PRODUCT putative indolepyruvate ferredoxin oxidoreductase alpha subunit GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1375770..1377932) GB:FROM 1375770 GB:TO 1377932 GB:DIRECTION - GB:PRODUCT putative indolepyruvate ferredoxin oxidoreductase alpha subunit GB:PROTEIN_ID BAD56082.1 LENGTH 720 SQ:AASEQ MAERSFANEVGKLRQGAGSTLHVEGILAVTKALLQSGVAYVGGYQGAPISHLMDVLGDAKEVLDELGVYFENSASEATAAAMLAASVHYPLRGAVTWKSTVGTNVAADALANLASGGVTGGALIILGEDYGEGSSIMQERSHAFAMKSQMWLLDPRPDVTAIVDAVESGFELSEASNTPVFLLLRLRSCHLHGAFEAKDNKRPPLTVTEATRQPTRDVSRIVLPPASFQHEREKIEDRWPAAVRYIREHGLNEVFGADLADVGIIVQGGLYNTLNRSMELLGCSDAFGNTRVPLYVMNVAYPVIDEEVVEFCRGKRAVLLVEEGQPDFIEQNINTVLRRADVPTVLHGKDLFTMAGEYTSLVVTRGLHEFLARYLPTAVTAEPALLRPADDPASPFATRVDPQLVHPRPPGLCTGCPERPIFSGLKLAERETGKHHISADIGCHLFSVNAPFDLGATTMGYGLGSAAASALNSTGSDRRTIAMMGDGGFWHNGLSSGVGNAVYNKNDQLLVVVDNGYAAATGGQDVLSSAAELPARSTKHPIERAVRGIGVRWAKTIDDTYDVTKVRDTFVEALTTDEPGPKVLVMQSECQLNKQRREKPQRARALREGKRVVRERYGVDPETCTGDHACIRISGCPSLTVTDNPDPLRTDPIATVLDSCVGCGVCGANAHAAVLCPSFYRTDVVYNPTRRDRLLARVRGWWIGLLARGVERRIAGLEAQ GT:EXON 1|1-720:0| BL:SWS:NREP 1 BL:SWS:REP 18->666|IORA_METTH|2e-43|31.3|578/618| SEG 73->86|saseataaamlaas| SEG 460->476|gyglgsaaasalnstgs| RP:PDB:NREP 2 RP:PDB:REP 28->604|3ea4A|3e-22|11.6|545/581| RP:PDB:REP 619->699|1bluA|4e-07|15.1|73/80| HM:PFM:NREP 2 HM:PFM:REP 440->584|PF02775|7.1e-19|28.9|135/150|TPP_enzyme_C| HM:PFM:REP 28->185|PF02776|6.4e-05|21.3|150/172|TPP_enzyme_N| RP:SCP:NREP 3 RP:SCP:REP 28->196|1powA2|9e-11|13.5|163/174|c.36.1.5| RP:SCP:REP 409->590|1upaA3|1e-12|14.8|176/198|c.36.1.9| RP:SCP:REP 619->693|1jb0C|8e-07|23.2|69/80|d.58.1.2| HM:SCP:REP 17->278|1b0pA1|3e-33|20.9|249/0|c.36.1.8|1/1|Thiamin diphosphate-binding fold (THDP-binding)| HM:SCP:REP 389->634|1b0pA2|4.2e-28|23.3|236/0|c.36.1.12|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 214 OP:NHOMOORG 159 OP:PATTERN --2-12111111111111-111-1--------111---222221111112223-2222222-111--- -------------------------1----------1-1----1-----------------11---1------------122------1111-111------------------------------1-11---1-------111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2231-----------21------1-1---1-2---1111-2121-121---1----------1-2-1---11111----------1---1--1--12--------------------1-------2-------------2-2--------------------------------2--------------------1---------2-11-----1-1---1-1-42--1----------------112-241111-111111-2321221211111--12---------------------11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--11-----11- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 682 STR:RPRED 94.7 SQ:SECSTR ######################EEHHHHHHHHHHHTTccEEEEcccGGGHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHcccHHHHHEEEEEcTTHHHHTTHHHHHHHHHHTccEEEEEEEccGGGTTTTcTTcccHHHHHGGGccEEEEcccGGGHHHHHHHHHHHHHcccccEEEETccEEEEEEEcHHEEEEEEHHHHHcEEccccccccccHHHHHTccccccHHHHHHHHHHHHcHHHHHHHcccEEEEEcGGGTTcHHHHHHHHHHHcccEEEcTTTTTcccTcTTEEEEccTTccHHHHHHHHHccEEEEEcccccHHHHccGGGTTTTcEEEEEEccGGGTTccccccEEEEccHHHHHHHHHHHHHHTHHccHHccccHHHHHHHHHHHHHcccccccTTcccHHHHHHHHHHTTccEEEEccHHHHHHHHcccccTTcEEcccccTTcHHHHHHHHHHHcTTccEEEEEEHHHHHHTTHHTHHHHHHHTTccEEEEEEEccccHHHHHHHHHHcTTcccccccccGGGTTcccccHHHHHHTTccEEEEccGGGHHHHHHHHccccEEEEEEccTTccccccccTTccGHHHHHHHHHTTTcccHHHHHccccTTGGTTGcTTccEEEccccEEEcGGGccTTTTccccHHHHHcGGHHHcTTccEEEcTTccccHHHHHHHHHHHHTT################ DISOP:02AL 1-6, 714-720| PSIPRED cccHHHccHHHccccccccEEEEEHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccccccEEEEEEcHHHHHHHHHHHHccHHHHHHcccccEEEEcccccccHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHccHHHHHHHHHHccccEEEEEEEccEEEEcccccccccccccccccccccHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEccccccHHHcccccccccccccccccccccEEcHHHHHHHHHHHHHHcccEEEEEcccccEEEccEEEEcccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //