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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56084.1
DDBJ      :             putative dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  114/915 : Eukaryota  35/199 : Viruses  0/175   --->[See Alignment]
c.3.1
:537 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->45 1w4xA PDBj 1e-04 50.0 %
:RPS:PDB   12->67,184->501 3cnsB PDBj 2e-08 32.7 %
:RPS:SCOP  5->67 1f8rA1  c.3.1.2 * 5e-10 33.3 %
:RPS:SCOP  238->291 1d5tA1  c.3.1.3 * 3e-07 25.9 %
:HMM:SCOP  1->401 1ltxR1 c.3.1.3 * 4.4e-34 29.1 %
:RPS:PFM   8->45 PF00996 * GDI 1e-04 44.7 %
:HMM:PFM   10->522 PF01266 * DAO 3.9e-11 28.4 306/358  
:BLT:SWISS 9->501 P49_STRLI 6e-34 32.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56084.1 GT:GENE BAD56084.1 GT:PRODUCT putative dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1378867..1380480) GB:FROM 1378867 GB:TO 1380480 GB:DIRECTION - GB:PRODUCT putative dehydrogenase GB:PROTEIN_ID BAD56084.1 LENGTH 537 SQ:AASEQ MSAHTSAEVDAIVVGSGINGLVAAAELARAGWSVLVAERNSDIGGFIATEERTLPGYRHDTFSSWHPLFVTGAAYAGLGELLHEHGLTYRNTDGWVTASVGDDGAVTAAHRDPERTAAAFTDAGDRAAYLEMVARLTANLPAIGGLMGAELRSPAVLGPVTGLLRGNGRRGTETWLRDALTSGRGYTRRYFRGPEVDHLFAPWLLHAGLAPDHATGGLMVPMLATTLHAAGLPVVAGGSGEFVAAFRSLLGALGVRIETGTEVERIVVESGRATGVVAGGRTFRARRAVLASVTPTALYGDLLPAAAVDADLRAEAARFRYGRGEMQIHVALSGPLGWRDPRLAEIPLVHLSDGSASTGIACAEAEAGLLPRRPTVVVGQQYVLDPDRVPAGAAALWLQLQEVPFAPRGDAAGALDTAAGWTKELASAYADRVLDRIAAHAPDLRAKVLAVDVVTPADLAAYNVNAVAGDPYGGSGELDQSYLWRPLGSVGRHRTPVPGLWQIGASTHPGPGLGGGSGHLVATTLTRPGPLARLRRR GT:EXON 1|1-537:0| BL:SWS:NREP 1 BL:SWS:REP 9->501|P49_STRLI|6e-34|32.7|434/469| SEG 77->87|glgellhehgl| SEG 115->128|rtaaaftdagdraa| SEG 162->171|gllrgngrrg| SEG 301->317|dllpaaavdadlraeaa| SEG 409->420|gdaagaldtaag| SEG 504->523|gasthpgpglgggsghlvat| BL:PDB:NREP 1 BL:PDB:REP 8->45|1w4xA|1e-04|50.0|38/533| RP:PDB:NREP 1 RP:PDB:REP 12->67,184->501|3cnsB|2e-08|32.7|360/487| RP:PFM:NREP 1 RP:PFM:REP 8->45|PF00996|1e-04|44.7|38/385|GDI| HM:PFM:NREP 1 HM:PFM:REP 10->522|PF01266|3.9e-11|28.4|306/358|DAO| RP:SCP:NREP 2 RP:SCP:REP 5->67|1f8rA1|5e-10|33.3|63/370|c.3.1.2| RP:SCP:REP 238->291|1d5tA1|3e-07|25.9|54/336|c.3.1.3| HM:SCP:REP 1->401|1ltxR1|4.4e-34|29.1|350/501|c.3.1.3|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 194 OP:NHOMOORG 149 OP:PATTERN -------------------------------------------------------------------- 122--1-1111-1-11122-21--2222222112224243111111111111211-12--112-12-321------------1-----------------------1111-----------------------------11---11-122--1-1---------1-1112-------------121----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111--------11--1----1--------------1------3--1---------------1---1111--------------------------------------------------13------------------------------1-1------1---------12--------------------1----------------111-------11--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111-1------------------------------------------------------------------1- --------------1--------------------------------------1--------------------------------------------------------212111--1--11-11-1-------1---1----1--11-1--111111----2-1-----11------------1121-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 499 STR:RPRED 92.9 SQ:SECSTR ccccccEEEEEEEEcccHHHHHHHHHHHTTcccEEEEcccccccTTccEEEcGEGGcEEEccccEEccTTTcHHHHHHHHHHHHHccccETTTcHHHHHHHHHHHHHccccEEcEEEEEcccccccEEEETTTEEcTTcTTTcHHHHHHHHHHHHHHHTHHHHHHHTTccccccccHHHHHHHHHHHHHHGGGccHHHHHHHHHHGGGGHHHHTccTTTccHHHHccccccccEEEccHHHHHHHHHTcccGGGEEEEccccEEEEEEETTTEEEEEETTccEEEEcEEEEcccHHHHTccTTccEEEccccHHHHHHTTccEEEccEEEEEEEccccccccccEEEEcccccHHHHHHHHHcccHHHHHccccccTTcccEEEEEHHHHHcccEEEEEEEccTHHHHHH##cTHHHTTTHTTTcHHHHHHHHHHHHHHHHHHTTccccEEcccccccccccccEEEEEEEccccEEEccTTccTHHHHHHHHHcccTTEE#################################### DISOP:02AL 1-6, 533-537| PSIPRED ccccccccccEEEEcccHHHHHHHHHHHHccccEEEEEccccccccEEEcccccccEEEccccHHHHHHccHHHHHHHHHHHHHcccEEEEccccEEEEccccccEEcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEEEcccEEEEccEEEEcccHHHHHHHHcccccccHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHcccccccccccccccHHHHHHccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccc //