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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56087.1
DDBJ      :             putative endoribonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  43/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.79.1
:130 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->127 1nq3D PDBj 5e-07 29.2 %
:RPS:PDB   4->130 2dyyH PDBj 1e-20 28.6 %
:RPS:SCOP  4->128 1jd1A  d.79.1.1 * 8e-21 25.8 %
:HMM:SCOP  3->130 1qd9A_ d.79.1.1 * 1.3e-33 39.0 %
:RPS:PFM   17->129 PF01042 * Ribonuc_L-PSP 4e-11 38.2 %
:HMM:PFM   15->128 PF01042 * Ribonuc_L-PSP 2e-25 35.1 111/121  
:BLT:SWISS 1->127 Y1251_PYRAB 1e-08 32.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56087.1 GT:GENE BAD56087.1 GT:PRODUCT putative endoribonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1382043..1382435 GB:FROM 1382043 GB:TO 1382435 GB:DIRECTION + GB:PRODUCT putative endoribonuclease GB:PROTEIN_ID BAD56087.1 LENGTH 130 SQ:AASEQ MAVERINPATLAKPSGFAHATRHRGIVHLAGQTAMDADGKIVEGGIVEQFRQAMTNMLTALAAAGGRPQDLVSVTIYLLDIPDYQANGKEIGRIWRELAGTEYPAMTGVGVTALWQPEALIEIQAVAAID GT:EXON 1|1-130:0| BL:SWS:NREP 1 BL:SWS:REP 1->127|Y1251_PYRAB|1e-08|32.0|122/127| SEG 53->66|amtnmltalaaagg| BL:PDB:NREP 1 BL:PDB:REP 27->127|1nq3D|5e-07|29.2|96/132| RP:PDB:NREP 1 RP:PDB:REP 4->130|2dyyH|1e-20|28.6|119/122| RP:PFM:NREP 1 RP:PFM:REP 17->129|PF01042|4e-11|38.2|110/119|Ribonuc_L-PSP| HM:PFM:NREP 1 HM:PFM:REP 15->128|PF01042|2e-25|35.1|111/121|Ribonuc_L-PSP| RP:SCP:NREP 1 RP:SCP:REP 4->128|1jd1A|8e-21|25.8|120/126|d.79.1.1| HM:SCP:REP 3->130|1qd9A_|1.3e-33|39.0|123/0|d.79.1.1|1/1|YjgF-like| OP:NHOMO 48 OP:NHOMOORG 44 OP:PATTERN -------------------------------------------------------------------- ----1----------------------------1111---------------1--------1----1111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------211------------------1------1--12--------------1---1--------11-------------1----------------------------------1---11--------1------11------1-1------111--1--111--2--------------------1-----------------------------12----------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 130 STR:RPRED 100.0 SQ:SECSTR HHcEEEccTTcccccccccEEEETTEEEEEEEccEETTTTEEcccHHHHHHHHHHHHHHHHHHHTccTTTEEEEEEEEcccccHHHcTTHcTTHHHHHcTTTccEEEEEEcccccTTcccEEEEEEEEcc DISOP:02AL 130-131| PSIPRED ccEEEEcccccccccccccEEEEccEEEEEcEEEEccccccccccHHHHHHHHHHHHHHHHHHccccHHHEEEEEEEEccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccEEEEEEEEEEc //