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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56091.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  136/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:359 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   245->346 1bl0A PDBj 4e-14 15.2 %
:RPS:SCOP  245->291 1bl0A1  a.4.1.8 * 1e-09 19.1 %
:RPS:SCOP  313->346 1bl0A2  a.4.1.8 * 2e-05 17.6 %
:HMM:SCOP  241->292 1d5yA1 a.4.1.8 * 4.5e-10 32.7 %
:HMM:SCOP  295->346 1d5yA2 a.4.1.8 * 0.0001 30.6 %
:HMM:PFM   252->293 PF00165 * HTH_AraC 1.2e-10 26.2 42/42  
:HMM:PFM   313->346 PF00165 * HTH_AraC 6.6e-09 39.4 33/42  
:HMM:PFM   84->174 PF02311 * AraC_binding 0.00039 18.9 90/136  
:BLT:SWISS 39->346 THCR_RHOER 5e-37 32.6 %
:PROS 296->341|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56091.1 GT:GENE BAD56091.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1386889..1387968) GB:FROM 1386889 GB:TO 1387968 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56091.1 LENGTH 359 SQ:AASEQ MVMRDCDDGHRIVMRWTIPVEEPLQYEDRPLARHQLTTSGDPDLVRSAVGTAFCDHRLSPLRRDIALDAHFHGVRWDTAGVYYLEYGTDVRIDPRDLDDFYLIQVPVEGHAAITVGSRSFVSTPEVASVLEPGDRVSMAWEGANRQLLLRLDRATVHDAVRKKLGREPAAPLVFDPRMDLTTPANRTWRGLLTLLVDAIDRAAAPTSIAVQEFEGLLVSQLILGQPHNYRDELDRTPQPVVSRPIARAAELIEAHAHEPLTVDDIADAVGIGTRTLQDGFRRYYNTTPMAFLRDVRLRRVRTDLLQADPTLTTVTDIAIRWGFLHPGRFSVLYRDRFGESPSRTLRLATDGAAQTAAAC GT:EXON 1|1-359:0| BL:SWS:NREP 1 BL:SWS:REP 39->346|THCR_RHOER|5e-37|32.6|307/332| PROS 296->341|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 292->305|lrdvrlrrvrtdll| SEG 348->358|atdgaaqtaaa| RP:PDB:NREP 1 RP:PDB:REP 245->346|1bl0A|4e-14|15.2|99/116| HM:PFM:NREP 3 HM:PFM:REP 252->293|PF00165|1.2e-10|26.2|42/42|HTH_AraC| HM:PFM:REP 313->346|PF00165|6.6e-09|39.4|33/42|HTH_AraC| HM:PFM:REP 84->174|PF02311|0.00039|18.9|90/136|AraC_binding| RP:SCP:NREP 2 RP:SCP:REP 245->291|1bl0A1|1e-09|19.1|47/54|a.4.1.8| RP:SCP:REP 313->346|1bl0A2|2e-05|17.6|34/62|a.4.1.8| HM:SCP:REP 241->292|1d5yA1|4.5e-10|32.7|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 295->346|1d5yA2|0.0001|30.6|49/0|a.4.1.8|2/2|Homeodomain-like| OP:NHOMO 291 OP:NHOMOORG 136 OP:PATTERN -------------------------------------------------------------------- ---------------11----4---1------233432B6---------21-1---------1-11----------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1224---5-331------------------------5--1567346----------1-----2-----------------------------------------------1A------253553522222441-2222-34232221----1-----1--132----1--------------172--------------------------------------------------------------------------------------------------------------111-1111--11-1111111111--------------1111111111111111-111-11------------------------------------------------22222-2---1-22222232-11121---------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 157 STR:RPRED 43.7 SQ:SECSTR #############################################################################################################################################################################################ccHHHHHHHHHHHHHTTcTTccEEEEEEccHHHHHTTTTcGGHHHHHHTTccHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHT############# DISOP:02AL 1-7, 227-242, 346-359| PSIPRED ccccccccccEEEEEEEccccccccccccccccccEEEcccHHHHHHHHHHHHcccEEEEcccccccEEEEEEEEEccEEEEEEEEccEEEEEccccccEEEEEEEEEcEEEEEEccEEEEEcccEEEEEccccEEEEEEcccccEEEEEEcHHHHHHHHHHHccccccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccc //