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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56092.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  834/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:267 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   57->247 1zjyA PDBj 1e-20 31.4 %
:RPS:PDB   7->249 2d1yB PDBj 5e-27 30.0 %
:RPS:SCOP  50->255 1pwxA  c.2.1.2 * 2e-30 15.5 %
:HMM:SCOP  5->244 1zemA1 c.2.1.2 * 1.1e-67 38.8 %
:RPS:PFM   58->168 PF00106 * adh_short 3e-08 35.1 %
:RPS:PFM   205->262 PF06299 * DUF1045 3e-04 37.9 %
:HMM:PFM   10->169 PF00106 * adh_short 7.4e-27 28.7 157/167  
:BLT:SWISS 57->247 BACC2_BACSU 2e-23 35.1 %
:PROS 138->166|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56092.1 GT:GENE BAD56092.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1388231..1389034 GB:FROM 1388231 GB:TO 1389034 GB:DIRECTION + GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56092.1 LENGTH 267 SQ:AASEQ MPQSSSLANKTAIVTGGATLFGAAVVEELVAAGARVVLADLDDAAGPQVAQRTGATFVYTDVTDNDSIARCVATAVERFGSLDVLVNLACSYGDDGADTDRATWLRTLDVNLVGAVVFAAAARPHLARAGGAVINLSSISAKVAQTGRWVYPASKAAIVQVTRSMATDYAGDGIRVNSVSPGWTWSKIMDDLSGGDRAHTDAVAAPFHVLGRVGDPHEVGRVIAFLASDAASFVTGADWAVDGGYSALGPEQAVPAIPRLAAVDATA GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 57->247|BACC2_BACSU|2e-23|35.1|191/253| PROS 138->166|PS00061|ADH_SHORT|PDOC00060| SEG 22->46|gaavveelvaagarvvladlddaag| SEG 113->132|vgavvfaaaarphlaragga| BL:PDB:NREP 1 BL:PDB:REP 57->247|1zjyA|1e-20|31.4|188/251| RP:PDB:NREP 1 RP:PDB:REP 7->249|2d1yB|5e-27|30.0|237/242| RP:PFM:NREP 2 RP:PFM:REP 58->168|PF00106|3e-08|35.1|111/169|adh_short| RP:PFM:REP 205->262|PF06299|3e-04|37.9|58/160|DUF1045| HM:PFM:NREP 1 HM:PFM:REP 10->169|PF00106|7.4e-27|28.7|157/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 50->255|1pwxA|2e-30|15.5|206/252|c.2.1.2| HM:SCP:REP 5->244|1zemA1|1.1e-67|38.8|240/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 8313 OP:NHOMOORG 1051 OP:PATTERN --111-2575756553-6-2---141173555-1---------21121--311--2--1-11532-12 98B3L--3227121EeOAA-AT22LqA9AAAFRXbZKZno3N5oGFB21952IAD33711EBO1D7MNRHA----1--1184L11-1-55661411---42E278N5K391111111---11112121321113328779A2229644762131111211422131974B2--11---1-1--B9655441A3E778788898788878H9AAAD7898BGEDA63443328N733333233333332466A751714414-1-2333352234771-24341222221333333333233422433424432111---11133353A444433443462661454122115611275112124333234512617RCCF11111C5pQP358JEJIE9ABA89BBBBK-CFJBCWAIMgH-aNNCQLUfccaZKQ7A6GCLKBJLDAE33333333HJG755781111111111-12222122112212111149bkC3BPLGNgVZeZcJIHIGRRYaJIJI9HpLqLncL24FGCE8D86H8L8ZS6853343641111111225BB44D2321211-222213643A33625555AE2112211111111111111111211114465537A82F6143435588433362634451-1-33611----78875B68996877798-9888767A89977788987FKI844567435655555455555J7866657114888888888881-1212111554537CK9111415-1111-331787A836233E7HHEGACCRAB9EFDHCE3111111111223B3333354556C9FCHBB7884333--21775444--------1-3-------------------------3232155565173 11--326-1---266NULIRJMDZSXPEE7CBCCA87HCEAEF9A8EHKQQThZEEFB9DBC334-23-3--313-----244464-6-7B8U9H6B886444887-4B4n9A898-3-1113244-319N4-44412215344213-1151-41437AKGC2JC5A76917O784353Z2226D9OFYFN5659773B ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 264 STR:RPRED 98.9 SQ:SECSTR cccGGGTTTcEEEEETTTcHHHHHHHHHHHHTTcEEEEEEccTTHHHHHHHHHTcEEEEccTTcHHHHHHHHHHHHHHHccccEEEEccccccccTTTccHHHHHHHHHHHTHHHHHHHHHHHHHGGGTcEEEEEEccGGGTcccTTcHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEcccccHHHHHHccHHHHHHHHHHHTTcTTcccccHHHHHHHHHHHHcGGGTTccccEEEEcTTGGGcccTTccTcccTTcccc### DISOP:02AL 1-4, 261-267| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEcccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHcccccEEEEEccccEEEccccccccccccccccccc //