[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56104.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  39/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:235 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   39->136 3bniA PDBj 1e-09 29.6 %
:RPS:PDB   39->222 2dg7A PDBj 2e-12 12.2 %
:RPS:SCOP  33->107 1rktA1  a.4.1.9 * 6e-11 18.7 %
:HMM:SCOP  31->114 1t33A1 a.4.1.9 * 1.8e-11 26.5 %
:RPS:PFM   47->90 PF00440 * TetR_N 7e-04 34.1 %
:HMM:PFM   47->87 PF00440 * TetR_N 1.5e-12 39.0 41/47  
:BLT:SWISS 40->121 BSCR_BACSU 3e-08 30.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56104.1 GT:GENE BAD56104.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1411415..1412122) GB:FROM 1411415 GB:TO 1412122 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56104.1 LENGTH 235 SQ:AASEQ MEVQAQARAKPKKRHLDPALEMQDDPRELMPRRRPTQERSKRKFDALLQASRELLVEVGFESFTCEEVAARAEVPIGTLYQFFANKYVIVCELNRQDLVAVSQELADFHGEIPSLDWLRHMNQFVDHLANLWMTDPSRREVWLAMQSTPSTRATGAIHEKEFAEVVSQMLRPLTPRTPRARRTMMAEVLVHVVYSMLNFSVQDEQSHADAVAELKRLMVAYLLVAEKESRTGGGR GT:EXON 1|1-235:0| BL:SWS:NREP 1 BL:SWS:REP 40->121|BSCR_BACSU|3e-08|30.5|82/194| SEG 169->186|mlrpltprtprarrtmma| BL:PDB:NREP 1 BL:PDB:REP 39->136|3bniA|1e-09|29.6|98/174| RP:PDB:NREP 1 RP:PDB:REP 39->222|2dg7A|2e-12|12.2|181/185| RP:PFM:NREP 1 RP:PFM:REP 47->90|PF00440|7e-04|34.1|44/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 47->87|PF00440|1.5e-12|39.0|41/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 33->107|1rktA1|6e-11|18.7|75/81|a.4.1.9| HM:SCP:REP 31->114|1t33A1|1.8e-11|26.5|83/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 43 OP:NHOMOORG 39 OP:PATTERN -------------------------------------------------------------------- 11--1111111-------------------------1111--------------------1---11-112-------------------------------------------------------------------------------2----------------121----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11----1-------------------------------------1--------------------------------------------------------------1----------1-----------------1---------------11-2-------------------------1---------------------------------1---------------------------------------------------------------------------------------------------1------------------------------------1------------------------------------------------------------------------------------------11--------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 99.1 SQ:SECSTR ##HHHHHHHHHHHHHTTEEEEEEEEEHHHHTcccccccccTTHHHHHHHHHHHHHHHccGGGccHHHHHHHTTccHHHHHHHcccTTGGGTTTccccHHHHHHHHHHHHTccTTccHHHHHHHHHHHTTTTTTccTTHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHTcHHHHHHHTcHH DISOP:02AL 1-45, 225-235| PSIPRED cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccc //