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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56108.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  24/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:243 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   31->87 2optB PDBj 7e-04 36.8 %
:RPS:PDB   25->85 2dt5A PDBj 1e-05 8.2 %
:RPS:SCOP  34->88 3c07A1  a.4.1.9 * 8e-06 25.5 %
:RPS:SCOP  111->239 2g7lA2  a.121.1.1 * 3e-08 15.7 %
:HMM:SCOP  28->88 2g7lA1 a.4.1.9 * 4e-10 31.1 %
:HMM:SCOP  97->242 2g7gA2 a.121.1.1 * 1.1e-23 36.4 %
:RPS:PFM   114->235 PF02909 * TetR_C 8e-04 33.0 %
:HMM:PFM   95->236 PF02909 * TetR_C 3.1e-16 25.4 134/139  
:HMM:PFM   36->80 PF00440 * TetR_N 7.2e-13 35.6 45/47  
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56108.1 GT:GENE BAD56108.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1415650..1416381 GB:FROM 1415650 GB:TO 1416381 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56108.1 LENGTH 243 SQ:AASEQ MTTSEDAALPRAVALLWGLDQPGERGPKRGLSLDQIVETAIAVADAEGAAALSMNRVAKELGFTAMSLYRYVDSKTTLLQLMLDRVIGGPPELDPAAGWRAGLRAWAAAEFETIARHPWFLDVPVPGPPSGPNNMAWLEAGLSALAGTAVPESVRLQLVMNLSLYVIGRSWAVRDFLSDTGEDADYDVAMRTVLDPARYPHLVSAFAHRAFENEEIDWARADFEFGLERMLDGYENLIRAYER GT:EXON 1|1-243:0| SEG 40->51|aiavadaegaaa| SEG 96->109|aagwraglrawaaa| SEG 123->134|vpvpgppsgpnn| BL:PDB:NREP 1 BL:PDB:REP 31->87|2optB|7e-04|36.8|57/205| RP:PDB:NREP 1 RP:PDB:REP 25->85|2dt5A|1e-05|8.2|61/210| RP:PFM:NREP 1 RP:PFM:REP 114->235|PF02909|8e-04|33.0|115/140|TetR_C| HM:PFM:NREP 2 HM:PFM:REP 95->236|PF02909|3.1e-16|25.4|134/139|TetR_C| HM:PFM:REP 36->80|PF00440|7.2e-13|35.6|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF02909|IPR004111| GO:PFM GO:0016566|"GO:specific transcriptional repressor activity"|PF02909|IPR004111| RP:SCP:NREP 2 RP:SCP:REP 34->88|3c07A1|8e-06|25.5|55/75|a.4.1.9| RP:SCP:REP 111->239|2g7lA2|3e-08|15.7|115/133|a.121.1.1| HM:SCP:REP 28->88|2g7lA1|4e-10|31.1|61/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 97->242|2g7gA2|1.1e-23|36.4|129/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 35 OP:NHOMOORG 24 OP:PATTERN -------------------------------------------------------------------- ----1---------------------------1---3221-112131----------1--12--113-12------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 204 STR:RPRED 84.0 SQ:SECSTR ########################cccHHHHHHHHHHHHHHHHHHHTTccEEcHHHHHHHHTccHHHHHHHHHHTTccccTTTcEHGGGcccccccTTcHHHHHHHHHHHHHHHHHcTTHHHHHHTcccccHHHHHHHHHHHHHHHTTTccHHHHHHHHHHHHHHHHHHHHHTcccTTHHHHHHHHHHHHHHTccTTTcHHHHHTHHHHHcc#####cHHHHHHHHHHHHHHH########## DISOP:02AL 1-35, 240-243| PSIPRED ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHcEEHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccHHcccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHc //