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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56114.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  36/915 : Eukaryota  0/199 : Viruses  11/175   --->[See Alignment]
d.2.1
:205 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   106->195 1bb3A PDBj 3e-10 15.3 %
:RPS:SCOP  130->205 1xsfA1  d.2.1.8 * 2e-06 17.6 %
:HMM:SCOP  104->205 1qsaA2 d.2.1.6 * 1.4e-12 23.9 %
:HMM:PFM   130->203 PF01464 * SLT 1.7e-13 30.0 70/121  
:HMM:PFM   21->85 PF10738 * Lpp-LpqN 6.2e-05 36.7 60/241  
:BLT:SWISS 102->201 YQBO_BACSU 2e-17 46.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56114.1 GT:GENE BAD56114.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1418678..1419295) GB:FROM 1418678 GB:TO 1419295 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56114.1 LENGTH 205 SQ:AASEQ MPDRRLPTFRRTTLREGITFAIAAAGLVAVTASSAVSVADSSPTARVTLAAEQQPAAQQQVEAAPVAEAAPAAEPAPAPAPEPVAEAVAQQAPPPPPVYENNLDGWIRQALDIMAANGIPGSYEGIYRNIMRESTGNPQAINLWDSNAAAGIPSKGLLQVIDPTFAAYHVPGTPFDVWDPVANIVAACNYAAHRYGSMDNVNSAY GT:EXON 1|1-205:0| BL:SWS:NREP 1 BL:SWS:REP 102->201|YQBO_BACSU|2e-17|46.4|97/1585| SEG 4->15|rrlptfrrttlr| SEG 21->42|aiaaaglvavtassavsvadss| SEG 50->98|aaeqqpaaqqqveaapvaeaapaaepapapapepvaeavaqqapppppv| RP:PDB:NREP 1 RP:PDB:REP 106->195|1bb3A|3e-10|15.3|85/130| HM:PFM:NREP 2 HM:PFM:REP 130->203|PF01464|1.7e-13|30.0|70/121|SLT| HM:PFM:REP 21->85|PF10738|6.2e-05|36.7|60/241|Lpp-LpqN| RP:SCP:NREP 1 RP:SCP:REP 130->205|1xsfA1|2e-06|17.6|68/86|d.2.1.8| HM:SCP:REP 104->205|1qsaA2|1.4e-12|23.9|92/168|d.2.1.6|1/1|Lysozyme-like| OP:NHOMO 63 OP:NHOMOORG 47 OP:PATTERN -------------------------------------------------------------------- ----2-----1-1--11-------1-111111---12---------------------------122233-------------------------------------------------------------------------------------------------------------------------------------------2-3212------------------------------------------------11-111-----1-2-1-----------------------------------------------1-------------21--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -1---------------------------------------------------------------------------------11---1------------1-1------------------------11-11------------------------1----------------- STR:NPRED 102 STR:RPRED 49.8 SQ:SECSTR #######################################################################################################HHHHHHHTTcTTGGGccHHHHHHHHHHHHHHTTcTTcEEEcTEETTTTEEEETTTTEETTTTccccccTcccTTcccGGGGGccccHHHHHHHHHccGGGGc DISOP:02AL 1-10, 86-103| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEccccccccccccccccEEEcHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccHHHHHHcc //