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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56115.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  273/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
c.3.1d.16.1
:454 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   178->390 1y56B PDBj 4e-07 26.2 %
:RPS:PDB   47->401 1b3mA PDBj 1e-25 15.2 %
:RPS:SCOP  46->305 1ng3A1  c.3.1.2 * 2e-23 17.0 %
:RPS:SCOP  287->351 1an9A2  d.16.1.3 * 2e-05 13.3 %
:HMM:SCOP  30->406 1pj5A2 c.3.1.2 * 2.3e-39 30.6 %
:RPS:PFM   45->387 PF01266 * DAO 1e-16 29.7 %
:HMM:PFM   33->388 PF01266 * DAO 1.3e-55 29.0 334/358  
:BLT:SWISS 46->394 ORDL_HAEIN 3e-28 28.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56115.1 GT:GENE BAD56115.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1420236..1421600 GB:FROM 1420236 GB:TO 1421600 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56115.1 LENGTH 454 SQ:AASEQ MRTDTTRYSNFTGWIDRPDDVRPAVDGDLTCAIAVVGGGMGGMATALRLAERGQDVVLLEAEFCGYGSASRNGGQIAGAPGGDLRMLRLFSGGKLPVMAKLAEHAGHYVEDLMKTHDIDCDYVPNGLVWGAVSPIMMLRVRTQAAILHAAGGQGTVGTREQLGLPAGFVGGMRETIGGMLNPGKLARGLRRAVLESAVKLFEQSPVRDVRRVGGIVELTTPNGTVRADKVVLATNAYAGEWDITPKNLSVPMYVIEIETEPIAPERLAELDWTSRSGIITQHQLMTHYRLTERNTIVCGVRRPERGLSYPLPDRVPSPSLVKEMAADLSDRFPTLSDVSIAQAWGGWIGITADWLSVAGQVGNNVYYSMACNGHGLCQVPYVGKMLADYIVDDEMPEDLAGIWSDVPKYPASMARLLSPFMIRLTWSVDRINDFFNGSKTLARRTRRRRGRAKR GT:EXON 1|1-454:0| BL:SWS:NREP 1 BL:SWS:REP 46->394|ORDL_HAEIN|3e-28|28.0|332/431| SEG 34->44|avvgggmggma| SEG 443->453|rrtrrrrgrak| BL:PDB:NREP 1 BL:PDB:REP 178->390|1y56B|4e-07|26.2|202/374| RP:PDB:NREP 1 RP:PDB:REP 47->401|1b3mA|1e-25|15.2|341/385| RP:PFM:NREP 1 RP:PFM:REP 45->387|PF01266|1e-16|29.7|323/354|DAO| HM:PFM:NREP 1 HM:PFM:REP 33->388|PF01266|1.3e-55|29.0|334/358|DAO| GO:PFM:NREP 1 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01266|IPR006076| RP:SCP:NREP 2 RP:SCP:REP 46->305|1ng3A1|2e-23|17.0|253/276|c.3.1.2| RP:SCP:REP 287->351|1an9A2|2e-05|13.3|60/93|d.16.1.3| HM:SCP:REP 30->406|1pj5A2|2.3e-39|30.6|258/0|c.3.1.2|1/1|FAD/NAD(P)-binding domain| OP:NHOMO 712 OP:NHOMOORG 279 OP:PATTERN -------------------------------------------------------1--1--------- -1-12---------2------2---2------22221-3311-1--------1--1-----25---22122-----------1-------------------------1------------------------------11----1-----------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------1------------------------211111111--212---2-23-22122222217---1--5-2362-66633372345431---2235434436--------111---12-----------------------------2-311--75426679884----88B82222-2A69253---111111--112335-------111111111-------1---------------------------1-----------------------------22-1--41---4333323344434434344--------------1-1---111-1---11-11111--1111-111111-2221122-111111111111111121111111-----------------1------------45----11-111-1--1213-2-1-1-21AA7B8998599782434-------------------12111--11111111-------------------------------------------------------------1- ---------------1-------------------------------------1-------------------------------------------------------------------------------------------------------------2------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 386 STR:RPRED 85.0 SQ:SECSTR ############################################HHHHHHHTTccEEEEcccccccccccccccEEEEccccTTcTTHHHHTGGTTTHHHHHHHHHHHHHHHHHHcccccEEcccEEEEEETTccHHHHHHHHHHHHHTcccEHHHHHHcTTccccTTEEEEEETTcEEEEHHHHHHHHHHHHHHTTcEEEccccEEEEcccTTcEEEEETTEEEEEEEEEEccGGGHHHHTEEcccEEEEEEEEEEEEEcccHHHHcGGGTccEEEEEETTEEEEEEcccTTccEEEEEccccEETTTccccTTccTHHHHHHHHHHHHHcGGGGcccEEEEEEEEEEEcTTcccEEEEETEEEEEEEccTTccGGGHHHHHHHHHHHHHHcccccccGGccGHHHHHHHccccccccccEEEEEcccc######################## DISOP:02AL 1-6, 451-454| PSIPRED cccccccccccccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccEEEEEccHHHHHHHHHHHHHHHHcccccEEccHHHHccccccEEEEEEccccEEcHHHHHHHHHHHHHHcccEEEEccEEEEEEEcccEEEEEccccEEEEEEEEEEccccHHHHHHHHccccccEEEEEEEEEcccHHHHHHHccccccEEEEccccEEEEEEccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEEcccccccccEEEccccccEEEEEEHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccc //