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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56126.1
DDBJ      :             putative aminotransferase
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  783/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:429 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->411 2zsmB PDBj 5e-50 33.0 %
:RPS:PDB   31->332 3dodB PDBj 4e-39 20.2 %
:RPS:SCOP  26->322 1d7rA  c.67.1.4 * 3e-45 21.2 %
:HMM:SCOP  1->416 2gsaA_ c.67.1.4 * 5.7e-88 32.1 %
:RPS:PFM   36->340 PF00202 * Aminotran_3 4e-39 36.4 %
:HMM:PFM   36->333 PF00202 * Aminotran_3 4.3e-65 32.0 297/339  
:BLT:SWISS 6->415 GSA_RHOBA 4e-53 33.1 %
:PROS 236->272|PS00600|AA_TRANSFER_CLASS_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56126.1 GT:GENE BAD56126.1 GT:PRODUCT putative aminotransferase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1434260..1435549 GB:FROM 1434260 GB:TO 1435549 GB:DIRECTION + GB:PRODUCT putative aminotransferase GB:PROTEIN_ID BAD56126.1 LENGTH 429 SQ:AASEQ MALESSRTAFERARRSVGGGVGSGLRAAMRPHPLFVREARGAHLWDLDGDRYVDYVMAWGPLVLGHSDPRILSAVSEAATKMQVVGTGHALEYLAAEAVLDAVPHGERLLWSNTGTEAVQVALRLARAATGRRRVLKFAKSYHGWHDTVYAGMSEDDSDRPARPGSKGQSPSVLDDLVVARFNDIHLAERLLRESVERDIAAVLIDPVMSNAGVEAPAPEFLSTLRDLCDRHGVVLVFDEVIAGFRIARGGAAEKYGVLPDLSVYGKAMAGGFTQSAVVGRADLVDQVTTGVTHAGTFNANPIALAAVEATMRVLADPDVYEALETISAEFHSVVGAVLGSVPGSGSFNRVGSLLQYVPAGGTTGLHGTGGLWTTIMEGMLRRGFLFMPSGKIFLSTAHTTADIEATAAALLHVISLSSSRDGSDRTLD GT:EXON 1|1-429:0| BL:SWS:NREP 1 BL:SWS:REP 6->415|GSA_RHOBA|4e-53|33.1|402/439| PROS 236->272|PS00600|AA_TRANSFER_CLASS_3|PDOC00519| SEG 14->24|rrsvgggvgsg| SEG 118->136|avqvalrlaraatgrrrvl| SEG 242->253|iagfriarggaa| SEG 361->375|ggttglhgtgglwtt| BL:PDB:NREP 1 BL:PDB:REP 4->411|2zsmB|5e-50|33.0|400/419| RP:PDB:NREP 1 RP:PDB:REP 31->332|3dodB|4e-39|20.2|287/416| RP:PFM:NREP 1 RP:PFM:REP 36->340|PF00202|4e-39|36.4|291/336|Aminotran_3| HM:PFM:NREP 1 HM:PFM:REP 36->333|PF00202|4.3e-65|32.0|297/339|Aminotran_3| GO:PFM:NREP 2 GO:PFM GO:0008483|"GO:transaminase activity"|PF00202|IPR005814| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00202|IPR005814| RP:SCP:NREP 1 RP:SCP:REP 26->322|1d7rA|3e-45|21.2|297/431|c.67.1.4| HM:SCP:REP 1->416|2gsaA_|5.7e-88|32.1|414/0|c.67.1.4|1/1|PLP-dependent transferases| OP:NHOMO 3676 OP:NHOMOORG 1028 OP:PATTERN 4412-332344433321422222221122212222222222222232122232253523231225-44 3845643444432295633-38335E333335B666469A5557341223355443242264B2A4B7986-111-1--1124221122211-321---3343536362511111111121111133223333223666881117823432242211121111223364821231121121125444411-65844444454544444455666644874564432333336735555554555555545546-------1---1122-----221111-------111------------------------2--111----33154-------1-151443111313--52122223334333333122125224335-11-1647774635555333443443444-226214153631A6675596675744332255445533633333333333232241112122211---------------2122114432666659CCAA95888799CA888858A76454411657533338354864422322633333333223234156642531341111222422444222252332111222222111111111131111226443528244385554546555545565741-1134211-11177872667776766677-77777667777677777769A96687366665666666666666653666621345555455555--2211111111134575333222111-1211355644553436589897D8B786766ABB211111111333333444446544445555444411112221441122------------------------------------1121212111423 11--121-1---113345343425563342222232444413321233244446-331232322411522112231111233322322-33343324333243443--2331111--1--111-21121131-11111-141-22111111--11311224714111121933113422k1214453495554432426 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 429 STR:RPRED 100.0 SQ:SECSTR cccHHHHHHHHHHHHHcGGGcccGGGGTTcHccccEEEEEcTEEEETTccEEEETTHHHHTcccccccHHHHHHHHHHHTTccccccccHHHHHHHHHHHHHccTTEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHTcHHHHHHTTcTTccEEEEEccEEEccccGGGcccccHHHHHHHHHHHHHHHHHHHGGGEEEEEEEccEEcTTTcEEccTTHHHHHHHHHHHTTcEEEEEcTTTTTTTccccGGGGGTccccEEEEcGGGGTTcccEEEEEEHHHHHTTccccccccTTTTcHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTcTTEEEEEEETTEEEEEcTTTcccccGGGcHHHHHHHHHHHTTEEccEETEEcccTTccHHHHHHHHHHHHHHHHccHHTTTcHHHHH DISOP:02AL 1-3, 421-422, 426-429| PSIPRED ccccHHHHHHHHHHHHcccccccccccccccccEEEEEccEEEEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHccccccccccccccccccccccccccEEcccccHHHHHHHHHHHccccEEEEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEEcccccHHHHccccEEccccEEEHEEEEcHHHccccEEEEEEcHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccEEEEEEEEccccccccccHHHHHHHHHHHHHccEEEEEcccEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccc //