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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56131.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  591/915 : Eukaryota  149/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:306 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->264 2qq5A PDBj 1e-42 45.3 %
:RPS:PDB   5->245 2ae1A PDBj 5e-29 21.4 %
:RPS:SCOP  6->271 1a27A  c.2.1.2 * 7e-28 23.1 %
:HMM:SCOP  1->244 1zemA1 c.2.1.2 * 1.5e-44 33.2 %
:RPS:PFM   7->189 PF00106 * adh_short 5e-14 41.2 %
:HMM:PFM   8->190 PF00106 * adh_short 6.8e-22 27.5 160/167  
:BLT:SWISS 6->277 DHRS1_MOUSE 2e-51 45.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56131.1 GT:GENE BAD56131.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1438463..1439383) GB:FROM 1438463 GB:TO 1439383 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56131.1 LENGTH 306 SQ:AASEQ MKQTDGRVAVVTGASRGAGKGIALALAERGMTVYVTGRTRQEGHSADGLPGTVFRTVEQIAARGGTAVPVVCDHGDDTQVRALFEQVQHEQGRLDVLVNNATALPAPPQSPTQGFWERPLAEELKPLEVGLRSHFVAAYYAAPLLVRTGGLIVHTSSPGARTYLPGVHGPVYGAGKAGSDKLAYDMAQELRPHGVAVLSIWMGVLDSEQLNRSGLGAEALIGTVFPGVESPELTGRVIGALATDPDVLTRTGRTYWGSELAAEYGITDVDGSVPPSYREWLGAPSEFTEVAPTYADFVAHRDGGPR GT:EXON 1|1-306:0| BL:SWS:NREP 1 BL:SWS:REP 6->277|DHRS1_MOUSE|2e-51|45.9|259/313| BL:PDB:NREP 1 BL:PDB:REP 5->264|2qq5A|1e-42|45.3|232/238| RP:PDB:NREP 1 RP:PDB:REP 5->245|2ae1A|5e-29|21.4|224/252| RP:PFM:NREP 1 RP:PFM:REP 7->189|PF00106|5e-14|41.2|165/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 8->190|PF00106|6.8e-22|27.5|160/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 1 RP:SCP:REP 6->271|1a27A|7e-28|23.1|251/285|c.2.1.2| HM:SCP:REP 1->244|1zemA1|1.5e-44|33.2|226/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 2542 OP:NHOMOORG 766 OP:PATTERN --1----1---------3-11---41133131-----------11-32--212-1-----1-2-2-12 45819--1----1-EC923-2B118E2122277GJFCETM184J22-4-11-5-22----464-4776B44----111-142C--1112323-2-----1-3-31B4B26-----------------1--3--13-7--422225226272242311-1--13-22694F3--11111--111831--32-63233333334235433275665443325734713334334A211111-1--111--133312--1--1----211123-1---1-1-1-1-------111111111111-11-11-----1-11---111-312232221222121322211112-1--15-1-11---1-323---41-11-46333-----11B88-129744432322233337-65674747388-E664B8ADDE9B5234-3-23122212333333332334--41------------------------------1694215527ACD7DB432335598334313H7B6EA6-26451113423724513--1-11-----------43-163421--1-11111132-6122-24348E-1-------------------------1112-14221331-1212-111---111-11-----3-1------3234262211-211122-122221122211122222267631-1-22-2222222222222812111-2--211111111111---3-----2222-1532-----1-----111111122-1-314234543655386745434-------------11-11-111--3233433-----------222122----------1--------------------------1-1-1321124- ----111------14442423215463111-11111232335411-22222674--311112--311--2-----1--1--11-1--1-6C44-54----1-121--321a556641113211121111281-111211-11333112211--352146DCB5784435578H8641-1P--144-46332-322--22 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 284 STR:RPRED 92.8 SQ:SECSTR GGGGTTcEEEEETcccHHHHHHHHHHHTTTcEEEEEEccHHHHHGTHcHHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHHTTTcccEEEEcccccccGGGccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHHHTccEEEEEEccGGGTcccTTTTcHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEcccccccHHHHHHHHHHHHTccccccccHHHHHHHHHHHHcGGccccEcccTTHHTTTccTTcHHHHHHGcccTTcccccHH###################### DISOP:02AL 303-306| PSIPRED cccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHcccHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHccEEEEEEcccccccccHHccccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEcccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccHHHHHHHHHcccccHHHHHHHHHHHcccHHHcEEccEEEEccEEEEcccEEEccccccccHHHHcccccccHHHHHHHHHHHHccccccc //