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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56132.1
DDBJ      :             putative oligoribonuclease
Swiss-Prot:ORN_NOCFA    RecName: Full=Oligoribonuclease;         EC=3.1.-.-;

Homologs  Archaea  0/68 : Bacteria  376/915 : Eukaryota  161/199 : Viruses  1/175   --->[See Alignment]
c.55.3
:216 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->175 2igiB PDBj 6e-42 47.0 %
:RPS:PDB   6->175 3cm5A PDBj 1e-28 8.5 %
:RPS:SCOP  6->176 1j9aA  c.55.3.5 * 5e-34 41.4 %
:HMM:SCOP  1->181 1ytaA1 c.55.3.5 * 7.3e-40 29.1 %
:RPS:PFM   7->93 PF00929 * Exonuc_X-T 3e-05 28.8 %
:HMM:PFM   6->169 PF00929 * Exonuc_X-T 1e-29 21.7 161/165  
:BLT:SWISS 1->216 ORN_NOCFA e-122 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56132.1 GT:GENE BAD56132.1 GT:PRODUCT putative oligoribonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1439667..1440317) GB:FROM 1439667 GB:TO 1440317 GB:DIRECTION - GB:PRODUCT putative oligoribonuclease GB:PROTEIN_ID BAD56132.1 LENGTH 216 SQ:AASEQ MSDKLVVWMDCEMTGLRLDSDKLIEVSALVTDSDLNILGDGVDIVIHADDAALAAMPPVVAEMHARSGLTDEVRRSTVTVAEAEQQVLDYIRQYVPTPRTVPLAGNSIATDRAFIARDMPALDAHLHYRMIDVSSIKELCRRWYPRIYFGQPEKGLTHRALADIKESIRELEYYRRTAFVAPPGPSTAEIAAVAAQLGGTAQTAESPQVEGTTQAD GT:EXON 1|1-216:0| SW:ID ORN_NOCFA SW:DE RecName: Full=Oligoribonuclease; EC=3.1.-.-; SW:GN Name=orn; OrderedLocusNames=NFA_12870; SW:KW Complete proteome; Cytoplasm; Exonuclease; Hydrolase; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->216|ORN_NOCFA|e-122|100.0|216/216| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004527|"GO:exonuclease activity"|Exonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| BL:PDB:NREP 1 BL:PDB:REP 6->175|2igiB|6e-42|47.0|168/179| RP:PDB:NREP 1 RP:PDB:REP 6->175|3cm5A|1e-28|8.5|164/294| RP:PFM:NREP 1 RP:PFM:REP 7->93|PF00929|3e-05|28.8|80/163|Exonuc_X-T| HM:PFM:NREP 1 HM:PFM:REP 6->169|PF00929|1e-29|21.7|161/165|Exonuc_X-T| RP:SCP:NREP 1 RP:SCP:REP 6->176|1j9aA|5e-34|41.4|169/184|c.55.3.5| HM:SCP:REP 1->181|1ytaA1|7.3e-40|29.1|179/0|c.55.3.5|1/1|Ribonuclease H-like| OP:NHOMO 568 OP:NHOMOORG 538 OP:PATTERN -------------------------------------------------------------------- ---1111111111111111-1111111111111111111111111111111112111111111111111111111211--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111111111111111111111111111111111111111111-11111111111111111111111111111--------------------------11---------------------------111111111111112222111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111--------------------------------------------------------- ----21------1111111111111-11111111111111-111111111111111111---11111111111111111111111111-121111111111111-1-122111111111-11112211-161-11111-11-111111-11-211111111-1211112351111111-----112211111------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1- STR:NPRED 196 STR:RPRED 90.7 SQ:SECSTR GGccEEEEEEEEEcccTTccccEEEEEEEEEETTTTEEEEEEEEEEEEEccccccccHHHHHHHHHHcccHHHHHTcEEHHHHHHHHHHHHHHTTccTTcEEEEEcccHHHHTHHHHHHHHTTccccGGGcEEEEHHHHHHHHHHHHccccccccccccHHHHHHHHTTccccccccccHcTTTcccccHHHHHHH#################### DISOP:02AL 1-2, 200-216| PSIPRED cccccEEEEEcccccccccccEEEEEEEEEEccccEEEcccEEEEEEccHHHHHccHHHHHHHcccccHHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHcHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccc //