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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56133.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  288/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:525 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   272->428 1e9sB PDBj 5e-17 12.8 %
:RPS:SCOP  285->428 1e9rA  c.37.1.11 * 2e-14 13.2 %
:HMM:SCOP  52->407 1e9rA_ c.37.1.11 * 4.2e-50 30.3 %
:RPS:PFM   56->525 PF05872 * DUF853 e-116 50.8 %
:HMM:PFM   47->523 PF05872 * DUF853 2.7e-191 48.6 475/504  
:BLT:SWISS 60->459 YJGR_ECOLI 2e-91 44.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56133.1 GT:GENE BAD56133.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1440582..1442159 GB:FROM 1440582 GB:TO 1442159 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56133.1 LENGTH 525 SQ:AASEQ MSPASAERAPAAADAETAAAAQRIAAGYAVDGPALELGTVVVDDAVDPTARVRIPLRTVNRHGLVAGATGTGKTKTLQGIAEQLSRAGVPVVLADIKGDLSGLSVPGEQNDKIAARARETGVPEWSPSGFPTEFVSLGTGGIGVPIRATITSFGPVLLSKVLELNETQESTLGLIFHWADKQGLALLDLKDLRAVITHLTSPEGKADLKGIGGVSAQTAGVILRALVNLEADGGDTFFGEPELDPADLIRTAGGQGVITLFELGAQAARPVMFSTFLMWVLADLFQTLPEVGDVDKPKLVFIFDEAHLLFADASKAFLEQVEQTVKLIRSKGVGVFFCTQLPTDIPNSVLSQLGARIQHALRAFTPDDQKALSKTVRTYPATDTYDLEKALTALGTGEAIVTVLSEKGAPTPVAWTRIVPPRSLMDTIGVDAIKSRALTSGLYSKYGQTIDRESASEILAAKLAAVPAEHPETAAAPGRSPSAQEQESAAERIMKNPAVKSFLRSAASAAGREITRSLFGTRRRR GT:EXON 1|1-525:0| BL:SWS:NREP 1 BL:SWS:REP 60->459|YJGR_ECOLI|2e-91|44.5|398/500| SEG 4->29|asaerapaaadaetaaaaqriaagya| SEG 39->53|tvvvddavdptarvr| SEG 66->76|agatgtgktkt| RP:PDB:NREP 1 RP:PDB:REP 272->428|1e9sB|5e-17|12.8|149/422| RP:PFM:NREP 1 RP:PFM:REP 56->525|PF05872|e-116|50.8|461/496|DUF853| HM:PFM:NREP 1 HM:PFM:REP 47->523|PF05872|2.7e-191|48.6|475/504|DUF853| RP:SCP:NREP 1 RP:SCP:REP 285->428|1e9rA|2e-14|13.2|136/420|c.37.1.11| HM:SCP:REP 52->407|1e9rA_|4.2e-50|30.3|307/433|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 293 OP:NHOMOORG 290 OP:PATTERN -----------------------------------------------1-------------------- ----1---------11111-11--1111111-11111111-----1-1----1111-1----1----1-------------1-----------------111111111-1---------------------------------------------------------------------------------------------------------------------------1------------------------------------------------1-----------------1111211111111-12---1111---------------------------1-------------------------1111-----1-1111111111111111111111-11-11-1-11--2111111111111111-111----111------------1---------------------------------1111--1111------------------------1111--1111111111111-1111111---------111111--1---1-----------11---11111--11---------------------------11---------11111---1111-1--1---------------1----111111111111-1111111111111111111111------1--------------11111111--111111111111---1111111111-----1111111-------111111-1----1111-1111111111---------------------------1111111-----------11------------1---------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 186 STR:RPRED 35.4 SQ:SECSTR ############################################################################################################################################################################################################################################HcccccccHHHHHHcTTcccEEEEEcGGGHHHHHHHHHHHHHHHHHHHHHHTTcccccTTccEEEEEEEG######GGccccccHHHHHHHcTTTTEEEEEEEccHHHHHHHHHTTccEEEEccccTTcHHHHHHHHHEEEEEEccEEcccHHHHHTccTTEEEEEEEccccccEEEEEccccccccccccc################################################################################################# DISOP:02AL 1-10, 462-497, 523-525| PSIPRED ccccccccccccccccccccHHHHHHHcccccccEEEcEEEEcccccccccEEEEHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHccccccHHHHHHHHccccccccccccEEEEEEcccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHHHHHcccccHHHHHHHHHHHHHHHHccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHcccHHHcccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //