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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56134.1
DDBJ      :             putative short chain dehydrogenase
Swiss-Prot:             

Homologs  Archaea  30/68 : Bacteria  764/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
c.2.1
:267 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->193 2japC PDBj 2e-15 32.3 %
:RPS:PDB   8->212 1dohB PDBj 6e-29 20.6 %
:RPS:SCOP  1->40 2bkaA1  c.2.1.2 * 2e-06 17.5 %
:RPS:SCOP  12->228 1a27A  c.2.1.2 * 3e-29 25.8 %
:HMM:SCOP  5->250 1zemA1 c.2.1.2 * 3.3e-56 31.4 %
:RPS:PFM   12->174 PF00106 * adh_short 3e-12 40.4 %
:HMM:PFM   12->175 PF00106 * adh_short 5.7e-31 32.7 159/167  
:BLT:SWISS 13->209 DHB12_ANAPL 6e-23 34.9 %
:PROS 144->172|PS00061|ADH_SHORT
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56134.1 GT:GENE BAD56134.1 GT:PRODUCT putative short chain dehydrogenase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1442575..1443378) GB:FROM 1442575 GB:TO 1443378 GB:DIRECTION - GB:PRODUCT putative short chain dehydrogenase GB:PROTEIN_ID BAD56134.1 LENGTH 267 SQ:AASEQ MSLPSPTTDNRAVVTGASSGIGTALAAELAGRGYSLILVARRGDLLDELAQRLTLAHGITAEVRAVDLADREQRAPLVDELAGRDIAILCNNAGVATFGPVAELDPAYERAQLELNAVAVHDLTLAVLPGMLARRAGGILISGSAAGNMPIPNNATYAASKAFANTFSESLRGELKDTGVHVTLLAPGPVRTEAPDPAEASIVDRMVPDFMWVSSEYTAKVSIDALARNKMRIVPGVISKGMSVAGQYSPRALSAPIAGAFYRKLGQ GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 13->209|DHB12_ANAPL|6e-23|34.9|195/312| PROS 144->172|PS00061|ADH_SHORT|PDOC00060| SEG 136->147|aggilisgsaag| BL:PDB:NREP 1 BL:PDB:REP 4->193|2japC|2e-15|32.3|186/246| RP:PDB:NREP 1 RP:PDB:REP 8->212|1dohB|6e-29|20.6|204/271| RP:PFM:NREP 1 RP:PFM:REP 12->174|PF00106|3e-12|40.4|161/169|adh_short| HM:PFM:NREP 1 HM:PFM:REP 12->175|PF00106|5.7e-31|32.7|159/167|adh_short| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00106|IPR002198| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00106|IPR002198| RP:SCP:NREP 2 RP:SCP:REP 1->40|2bkaA1|2e-06|17.5|40/231|c.2.1.2| RP:SCP:REP 12->228|1a27A|3e-29|25.8|217/285|c.2.1.2| HM:SCP:REP 5->250|1zemA1|3.3e-56|31.4|245/0|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 4691 OP:NHOMOORG 983 OP:PATTERN ------11111111111-1--1--63332121--------------22--1---22------21--34 6BA1J212112613HKDBB-BM33ETBABBBFHQRQHLNF265BD253284-435423--667395ACC43-111---12114-12112251-211---248174R7G58--------------34334633223222245---41B78B55465--1212333332C9J41121--11111193533---3464444446444444454266674453341365422243581111111-11111113222441212312111791133422-2264422332222--1111111111113112321212221431114442--14333333331311-331232421---53--12----11-21-1--12526F44412112B6CAA1327767622222222226-67566A5ACCC-IDD8IDFIRJHD8626286A76673444444444435653271-----------1---------1-------136A5327665FGHGKH52332AA95444415OCI7C9B-145911412418388346-345221111111233421382721-1---111-33311112245459C1--221111111112-1111111-1--115232742453311123-1131111232115--11241------547C2834553455544-54444454545544444448A7643225355565555555556744444442-333333333332---311111444437368111222111112113887795624245999767CB986C9598732222222222324222222322257757442222111--12762222----------1----2---2--------2-------11-1-111--361 ----CA6-632233766447798888B4422223623544434222647B69E9775243232463531512527-2-1226657612-4E661E51111213764-9H2PMKFEM734527C26B1D4BW8-B9F5665876D937422721B697GG8B86G7D3CAKC57AB1553J111497EIA3A76675772 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 267 STR:RPRED 100.0 SQ:SECSTR cccGGGGTTcEEEETTTTcHHHHHHHHHHHHTTcEEEEEEcccHHHHHHHHHHHHHTTccEEEEEccTTcHHHHHHHHHHHHHccccEEEEcccccccccGGGccHHHHHHHHHHHTHHHHHHHHHHHHHccTTcEEEEEccGGGTcTccccccHHHHHHHHHHHHHHHHHHHHHGGGTcEEEEEEEcccccHHHHHHGGGGcTTcTTccHHHHHHHHHHHHHHHHHHGGGTTcccEEcTTGGGccccHHHHHccHHHHHTcccTTc DISOP:02AL 1-4, 265-267| PSIPRED ccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHcHHHHHHHHHHHHHHHccc //