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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56136.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  121/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:181 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->175 1yg2A PDBj 1e-17 27.9 %
:RPS:PDB   4->84 2e1nB PDBj 9e-04 13.8 %
:RPS:SCOP  2->175 1yg2A  a.4.5.61 * 8e-22 30.3 %
:HMM:SCOP  2->179 1yg2A_ a.4.5.61 * 9.2e-42 28.7 %
:RPS:PFM   3->79 PF03551 * PadR 3e-08 36.4 %
:RPS:PFM   93->178 PF10400 * Vir_act_alpha_C 1e-06 38.4 %
:HMM:PFM   91->177 PF10400 * Vir_act_alpha_C 4.9e-29 44.8 87/90  
:HMM:PFM   3->82 PF03551 * PadR 2.1e-17 28.8 80/86  
:BLT:SWISS 3->172 PADR_BACSU 9e-14 29.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56136.1 GT:GENE BAD56136.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1445477..1446022) GB:FROM 1445477 GB:TO 1446022 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56136.1 LENGTH 181 SQ:AASEQ MALEHALLVSLTERSGSGYELARRFDKSIGFFWNATHQQIYRVLKRMEEAGWLDVESVAQEGRPDKKVYSVNAAGRAELARWIAEPSDSETPRSELGVKIRGAAYGDLDAVCAEVARHRDQHAHRLDVLRLIEKRDFPDPDRLTGTALHQYLVLRGGIRVAAGHVEWCEEVLQALRPPRTE GT:EXON 1|1-181:0| BL:SWS:NREP 1 BL:SWS:REP 3->172|PADR_BACSU|9e-14|29.9|164/182| BL:PDB:NREP 1 BL:PDB:REP 2->175|1yg2A|1e-17|27.9|165/169| RP:PDB:NREP 1 RP:PDB:REP 4->84|2e1nB|9e-04|13.8|80/112| RP:PFM:NREP 2 RP:PFM:REP 3->79|PF03551|3e-08|36.4|77/84|PadR| RP:PFM:REP 93->178|PF10400|1e-06|38.4|86/90|Vir_act_alpha_C| HM:PFM:NREP 2 HM:PFM:REP 91->177|PF10400|4.9e-29|44.8|87/90|Vir_act_alpha_C| HM:PFM:REP 3->82|PF03551|2.1e-17|28.8|80/86|PadR| RP:SCP:NREP 1 RP:SCP:REP 2->175|1yg2A|8e-22|30.3|165/169|a.4.5.61| HM:SCP:REP 2->179|1yg2A_|9.2e-42|28.7|178/0|a.4.5.61|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 159 OP:NHOMOORG 121 OP:PATTERN -------------------------------------------------------------------- ----4--1------11111-11--3211111311113112---311-------1---3--1111-14324--------1--2----------------------------------------------------------------2-------------------2222-----------------------1---------------112221--------111111111-----------------------1--------11---------------------11-------------------------------------11--------------------1-------122----------------------------111-------1--------------------------------------1---------------------------------------------------------------------1111----------1111-11--1111--111-----1--1-------------------------1---------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------1111111-----------------------------------21111111122------------------11-----------------------------------------1----------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 174 STR:RPRED 96.1 SQ:SECSTR #cHHHHHHHHHTTccEEHHHHHHHHHHGHcTTEEccHHHHHHHHHHHHHTTcEEEEEccTTccccEEEEEEccccccHHHHHHHccccccccccHHHHHHHGGGTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH###### DISOP:02AL 59-62, 178-181| PSIPRED ccHHHHHHHHHccccccHHHHHHHHHHHHccEEcccccHHHHHHHHHHHcccEEEEEEEccccccccEEEEcHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //