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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56138.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  194/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.1
:207 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->67 1ui6B PDBj 5e-05 33.3 %
:RPS:PDB   30->195 3br6A PDBj 2e-10 8.4 %
:RPS:SCOP  11->68 3c07A1  a.4.1.9 * 7e-09 29.3 %
:HMM:SCOP  11->89 2fbqA1 a.4.1.9 * 1.2e-14 40.5 %
:RPS:PFM   30->61 PF00440 * TetR_N 2e-04 53.1 %
:HMM:PFM   19->63 PF00440 * TetR_N 1.6e-16 48.9 45/47  
:BLT:SWISS 8->202 FABR_ENTS8 4e-20 42.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56138.1 GT:GENE BAD56138.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1447475..1448098) GB:FROM 1447475 GB:TO 1448098 GB:DIRECTION - GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID BAD56138.1 LENGTH 207 SQ:AASEQ MTEQAATRIERKERTRQALLEGTLALAAERGFAALSLREIARSAGIVPTAFYRHFASLEDLGATLVDEGVTALRLALRQVRRRPDSGLADTVRFVFEQVDAKRALFGFLTRERHGGSAALRKNIALELQLIVRELVADLSRLPALDDWSPRDLEIAADLIVSTVADGVAAYVAAPDPREQVAIRETTVQKIRLIALGMDNWWPPKDR GT:EXON 1|1-207:0| BL:SWS:NREP 1 BL:SWS:REP 8->202|FABR_ENTS8|4e-20|42.3|189/211| SEG 18->29|allegtlalaae| SEG 72->83|alrlalrqvrrr| BL:PDB:NREP 1 BL:PDB:REP 11->67|1ui6B|5e-05|33.3|57/194| RP:PDB:NREP 1 RP:PDB:REP 30->195|3br6A|2e-10|8.4|166/185| RP:PFM:NREP 1 RP:PFM:REP 30->61|PF00440|2e-04|53.1|32/47|TetR_N| HM:PFM:NREP 1 HM:PFM:REP 19->63|PF00440|1.6e-16|48.9|45/47|TetR_N| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| RP:SCP:NREP 1 RP:SCP:REP 11->68|3c07A1|7e-09|29.3|58/75|a.4.1.9| HM:SCP:REP 11->89|2fbqA1|1.2e-14|40.5|79/0|a.4.1.9|1/1|Homeodomain-like| OP:NHOMO 208 OP:NHOMOORG 196 OP:PATTERN -------------------------------------------------------------------- --------------211----1--11-----111111111----------------------1----111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1---------------------------------------------------------11-13-111111111111111111111111-------------11111111111111111-1111111111111111111111111111111--1---111111111111111-111111111111--11----------13--111111111111--12222222111--1111111111111-111----------111111111111111111111111--------11----------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 198 STR:RPRED 95.7 SQ:SECSTR ccTcccccccHHHHHHHHHHHHHHHHHHHHcTTTccHHHHHHHTTccHHHHHHHTccHHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccHHHHHHHHHHHHHHHHHTcccccHHHHHHHHHHHHHHHHHTTcHTH######### DISOP:02AL 1-18, 203-207| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccc //