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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56147.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  74/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:683 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   397->640 PF09678 * Caa3_CtaG 3e-49 43.9 %
:HMM:PFM   395->642 PF09678 * Caa3_CtaG 2.8e-88 46.9 241/244  
:HMM:PFM   248->344 PF05425 * CopD 6.3e-24 37.1 97/105  
:BLT:SWISS 56->229,361->673 Y105_MYCBO 4e-80 45.7 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56147.1 GT:GENE BAD56147.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1454935..1456986 GB:FROM 1454935 GB:TO 1456986 GB:DIRECTION + GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56147.1 LENGTH 683 SQ:AASEQ MSSPQDPAPATAAPEGARSASAGPFAAVTVVAGAIAAVVAALVVGLSAAQALSLLGIPDPGALTTYGLPAVRALADLFAALTVGALLCAAFLVPPQANGVLDVGGYRAVRMGSNFALAWAVCAALLVPLTVSDTTGQPVADIWRPEQLWRAIGQVDIAEAWRTTVVFALIVAVGARLVLRWGWTPVLFGGSILTMMPLALTGHSASGGSHDVATNSLILHLVAAAVWVGGLFAVLAHALRGGAHTDVATRRFSAIATVAFVVIGVSGVINSWVRVPWDELVTTTYGRLVLAKAAALAILGVIGALQRRSALPALAADPRDRGALIRFAGVEALVFAATMGLAVGLGRTPPPPPVSVPTPAEVELGYDLAGPPTVARMLFDWRFDLIFGTLAIVLAVLYLLGVRRLHARGDSWPVGRTIAWLCACALLLVTTSSGIGRYAPAMFSVHMMQHMALSMLAPILFALGGVVTLALRALPPAGRGGVPGPREWILAAVHNPVSRFLTHPIVASVIFVAGFYALYMGGIYDTFVDSHGAHLLMNLHFLLSGYLFYWVVIGIDPKPRQVEPLTKLGMVFGSLPFHAFFGVALMSMTTVMGGWFFRSLDLGWNGDLLGDQRTGGSLAWASGEVPLVVVMLALLIQWSRSDERMAKRYDRAAERDHDAELAAHNAMFAELARRDGGEREARS GT:EXON 1|1-683:0| BL:SWS:NREP 1 BL:SWS:REP 56->229,361->673|Y105_MYCBO|4e-80|45.7|487/661| TM:NTM 16 TM:REGION 32->54| TM:REGION 71->93| TM:REGION 110->132| TM:REGION 159->181| TM:REGION 185->207| TM:REGION 216->238| TM:REGION 252->274| TM:REGION 285->306| TM:REGION 324->346| TM:REGION 381->402| TM:REGION 413->435| TM:REGION 454->476| TM:REGION 500->522| TM:REGION 536->558| TM:REGION 569->591| TM:REGION 620->642| SEG 26->55|aavtvvagaiaavvaalvvglsaaqalsll| SEG 116->129|alawavcaallvpl| SEG 288->305|lvlakaaalailgvigal| SEG 348->359|tpppppvsvptp| SEG 472->486|ralppagrggvpgpr| SEG 600->611|ldlgwngdllgd| RP:PFM:NREP 1 RP:PFM:REP 397->640|PF09678|3e-49|43.9|237/241|Caa3_CtaG| HM:PFM:NREP 2 HM:PFM:REP 395->642|PF09678|2.8e-88|46.9|241/244|Caa3_CtaG| HM:PFM:REP 248->344|PF05425|6.3e-24|37.1|97/105|CopD| OP:NHOMO 108 OP:NHOMOORG 74 OP:PATTERN -------------------------------------------------------------------- ---1311211211121111-15111111111121122414-121211111125131131122112131111--------------------------------------------------------------------------1----------------------------------------------------------1---1-------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-20, 205-206, 641-655, 670-683| PSIPRED cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccc //