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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56148.1
DDBJ      :             putative amino acid deaminase
Swiss-Prot:             

Homologs  Archaea  25/68 : Bacteria  376/915 : Eukaryota  42/199 : Viruses  0/175   --->[See Alignment]
c.79.1
:320 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   51->320 1tdjA PDBj 7e-17 33.5 %
:RPS:PDB   34->314 2d1fA PDBj 3e-20 18.8 %
:RPS:SCOP  34->316 1p5jA  c.79.1.1 * 2e-27 22.3 %
:HMM:SCOP  17->316 1e5xA_ c.79.1.1 * 1.7e-70 37.6 %
:HMM:PFM   31->312 PF00291 * PALP 1.3e-63 41.2 279/297  
:BLT:SWISS 34->294 SRR_DICDI 1e-19 28.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56148.1 GT:GENE BAD56148.1 GT:PRODUCT putative amino acid deaminase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1456983..1457945 GB:FROM 1456983 GB:TO 1457945 GB:DIRECTION + GB:PRODUCT putative amino acid deaminase GB:PROTEIN_ID BAD56148.1 LENGTH 320 SQ:AASEQ MTDRDGALVAGEHARLYRSDVRLARRRLAGRIRKTPVFHTSVAGPAGPVPVTLKLEHLQHAGTFKVRGTLNALLAADPEDHVVIASAGNSGIAAALAAAWLGKTCTVVVPESAPHTKVAAMWSHGAEVLWHGTTYREAERYAAELAADRGALVLHAYDQLDVIAGAGVLALELEEQVRGRPPVLVSVGGGGLLAGVAAAFGRRQRVIGVEPVGMPALRAALTAERPVDVGPARPVLHPLGATRVGELALRLARRYDVPALLVTEEAITTAREYLWREFRIVVELAGATALAAILSGAYVPAPGERPVVVLCGANTDATGL GT:EXON 1|1-320:0| BL:SWS:NREP 1 BL:SWS:REP 34->294|SRR_DICDI|1e-19|28.7|261/324| SEG 22->33|rlarrrlagrir| SEG 84->99|iasagnsgiaaalaaa| SEG 135->147|yreaeryaaelaa| SEG 177->203|vrgrppvlvsvggggllagvaaafgrr| BL:PDB:NREP 1 BL:PDB:REP 51->320|1tdjA|7e-17|33.5|269/494| RP:PDB:NREP 1 RP:PDB:REP 34->314|2d1fA|3e-20|18.8|277/349| HM:PFM:NREP 1 HM:PFM:REP 31->312|PF00291|1.3e-63|41.2|279/297|PALP| RP:SCP:NREP 1 RP:SCP:REP 34->316|1p5jA|2e-27|22.3|283/319|c.79.1.1| HM:SCP:REP 17->316|1e5xA_|1.7e-70|37.6|298/477|c.79.1.1|1/1|Tryptophan synthase beta subunit-like PLP-dependent enzymes| OP:NHOMO 553 OP:NHOMOORG 443 OP:PATTERN 1-----111111111111-11---21112-11--------------------------------1-11 112-2---11-11--------1--------------2222---111--1---2221-1--111-1121211------------------------------------12---------------------------12234---1---1--------111--1---11---111-11111-11321---1-12-22222222-212221------22122111--1111111----1111111---11----------------------1-----------------------------------------------------1---1111111-1--1111111-----1--1122-11---1-------1---1112-------21111------------------112112-2-1---11-113--1--1112--1------13111111112-111--1------------------------------211--222221111111111122111111111211-1---111--32231212----1----1-------11-------------------111-1111-1111-1--1--------11------------11--111---1----11111--11111111-111-------------1---11-1111111111-111111111111111111111122---222222222222222211111111--311111111111--------------1-12--------------1111111----1111211-11111111222------------------------22111111221111-1---------------------------1--------1-------------1----1- ----21-----1-----------111---11-1----------------1-111--------------1-------1----------1-121-11-111----------1----1------------------------------------------------21--1--31-------6111---111-1----111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 287 STR:RPRED 89.7 SQ:SECSTR #################################cccEEEcHHHHHHHccEEEEEEGGGcTTccTTHHHHHHHHHHHHHTcEEEEccccHHHHHHHHHHHHHTcEEEEEccccccHHHHHHHHHTTcEEEEccccHHHHHHHHHHHHHHcTTEEEccTTcHHHHHHHTHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHEEEEEEEGGGcHHHcHHHHcccccccccccGGGcccccTTHHHHHHHHHHHTcEEEEEcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHTcTTcEEEEEEcccGccTTHH DISOP:02AL 1-3, 319-320| PSIPRED cccccccccccccccccHHHHHHHHHHHHHHHccccEEEcccccHHHccEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHccEEEEEcccHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHccccEEccccccEEEccccccccHHHHHHHHHHccEEEEEcHHHHHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHcccccEEEEEEEccccccccc //