[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56150.1
DDBJ      :             putative ABC transporter ATP-binding protein
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  875/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.37.1e.26.1
:558 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   17->53 2zu0C PDBj 4e-04 40.5 %
:BLT:PDB   31->515 3bk7A PDBj 8e-19 31.6 %
:RPS:PDB   2->44 3b9qA PDBj 2e-06 27.9 %
:RPS:PDB   25->514 3cmvA PDBj 7e-44 10.2 %
:RPS:SCOP  7->57 2vnuD1  b.40.4.5 * 2e-10 7.3 %
:RPS:SCOP  35->549 1mjgM  e.26.1.3 * 4e-28 8.1 %
:HMM:SCOP  8->233 1ii8.1 c.37.1.12 * 7e-52 34.4 %
:HMM:SCOP  279->508 1skyE3 c.37.1.11 * 4.7e-46 34.3 %
:RPS:PFM   361->471 PF00005 * ABC_tran 4e-06 33.7 %
:HMM:PFM   45->188 PF00005 * ABC_tran 7.5e-21 41.3 104/118  
:HMM:PFM   361->471 PF00005 * ABC_tran 1.8e-17 26.2 107/118  
:HMM:PFM   26->49 PF02463 * SMC_N 0.00076 52.2 23/220  
:HMM:PFM   335->368 PF00931 * NB-ARC 5.6e-05 38.2 34/285  
:BLT:SWISS 1->557 YJJK_SHIFL e-156 54.3 %
:PROS 160->174|PS00211|ABC_TRANSPORTER_1
:PROS 443->457|PS00211|ABC_TRANSPORTER_1
:REPEAT 2|1->265|317->553
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56150.1 GT:GENE BAD56150.1 GT:PRODUCT putative ABC transporter ATP-binding protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1458416..1460092 GB:FROM 1458416 GB:TO 1460092 GB:DIRECTION + GB:PRODUCT putative ABC transporter ATP-binding protein GB:PROTEIN_ID BAD56150.1 LENGTH 558 SQ:AASEQ MAEFIYQMKKVRKAHGDKVVLDDVTLNFLPGAKIGVVGPNGAGKSSVLKIMAGLDQPNNGEAFLAPGATVGILQQEPPLNEEKTVRGNVEEGLGEVKVKLDRFNEIAELMATDYSDELMEEMGKLQEYLDHADAWDVDSQLEQAMDALRCPPPDEPVTNLSGGERRRVALCKLLLSKPDLLLLDEPTNHLDAESVLWLEQHLAQYQGAVLAVTHDRYFLDNVAGWILELDRGRAYPYEGNYSTYLEKKAERLEVQGKKDQKLQKRLKEELAWVRSGAKARQAKNKARLGRYEEMAAEAEKMRKLDFEEIQIPAGPRLGNVVVEVEHLDKGFGDRQLIKDLSFTLPRNGIVGVIGPNGVGKTTLFKTIVGLEQPDSGTVRIGETVKLSYVDQNRAGIDPNKTVWQVVSDGLDYIEVGQQEMPSRAYVSAFGFKGPDQQKPAGVLSGGERNRLNLALTLKQGGNLILLDEPTNDLDVETLSSLENALENFPGCAVVISHDRWFLDRTCTHILAWEGDADNEAKWFWFEGNFEAYEANKIERLGPEAARPHRVTHRKLTRD GT:EXON 1|1-558:0| BL:SWS:NREP 1 BL:SWS:REP 1->557|YJJK_SHIFL|e-156|54.3|552/555| PROS 160->174|PS00211|ABC_TRANSPORTER_1|PDOC00185| PROS 443->457|PS00211|ABC_TRANSPORTER_1|PDOC00185| NREPEAT 1 REPEAT 2|1->265|317->553| SEG 170->184|lcklllskpdlllld| SEG 292->299|eemaaeae| SEG 347->359|ngivgvigpngvg| BL:PDB:NREP 2 BL:PDB:REP 17->53|2zu0C|4e-04|40.5|37/247| BL:PDB:REP 31->515|3bk7A|8e-19|31.6|405/593| RP:PDB:NREP 2 RP:PDB:REP 2->44|3b9qA|2e-06|27.9|43/298| RP:PDB:REP 25->514|3cmvA|7e-44|10.2|489/1190| RP:PFM:NREP 1 RP:PFM:REP 361->471|PF00005|4e-06|33.7|104/123|ABC_tran| HM:PFM:NREP 4 HM:PFM:REP 45->188|PF00005|7.5e-21|41.3|104/118|ABC_tran| HM:PFM:REP 361->471|PF00005|1.8e-17|26.2|107/118|ABC_tran| HM:PFM:REP 26->49|PF02463|0.00076|52.2|23/220|SMC_N| HM:PFM:REP 335->368|PF00931|5.6e-05|38.2|34/285|NB-ARC| GO:PFM:NREP 2 GO:PFM GO:0005524|"GO:ATP binding"|PF00005|IPR003439| GO:PFM GO:0016887|"GO:ATPase activity"|PF00005|IPR003439| RP:SCP:NREP 2 RP:SCP:REP 7->57|2vnuD1|2e-10|7.3|51/95|b.40.4.5| RP:SCP:REP 35->549|1mjgM|4e-28|8.1|504/728|e.26.1.3| HM:SCP:REP 8->233|1ii8.1|7e-52|34.4|224/370|c.37.1.12|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 279->508|1skyE3|4.7e-46|34.3|216/274|c.37.1.11|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 5958 OP:NHOMOORG 1114 OP:PATTERN 1---111--------2-111-11261141223421-1------231232-31-1132311111-1-12 3562B458999464B5533-38224E333334B7878DBA26567855554398945611775464789C3755595545852--2126676-7332-1347555767261111111111111143222322223323323222624232115-3444323335624457313332224133132511-12317EEGCE9DF8DDD9BD959969DFD736B88C677777DE855555455555555744559779DD877888855AC766574766666976865488898999A9955556566655659AA666AAA41898B7776687B6B59895755F64356672-EC441-321-2421-247143665233246599A5367656777767687789-455543556F32FCCBAA9FCCB87744579575563665555555574454549----------3432442353223321-1-1354336665558888655555559855555665C569822667345335565745544343844443444333545A4936563546333266768575755656A53544424444421112111113232433576455555554667565677775785775--344331--111A89B4A68887877777-8787778777867667668CBBBC7686877777777767676D77767677-A89AACBAAAAA--2412111455444967333435444342338566664533455554557565464555443122333316676B787789AC98554434444333332242444455111111115141-111-11111--111111-21---2523223222142 1211457-73314574543555556554455555555644644433445454554455544444544444444545525544444454-5645545444354566915R54453347333333233353XW5-64612-1333352332142183322338835343534F334449BF*FBE57B6EE676CCA766D ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 255-264, 269-309, 538-558| PSIPRED ccccEEEEEEEEEEEccEEEEEccEEEEEcccEEEEEccccccHHHHHHHHHccccccccEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHcccHHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHccEEEEEEccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccEEEEEEEEEEEccEEEEEccEEEEccccEEEEEccccccHHHHHHHHHcccccccEEEEEcccEEEEEEEccHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHcccHHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHccEEEEEEccEEEccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //