Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56156.1
DDBJ : putative DNA-binding protein
Swiss-Prot:
Homologs Archaea 6/68 : Bacteria 255/915 : Eukaryota 0/199 : Viruses 0/175 --->[See Alignment]
a.35.1
b.82.1
:187 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 13->174 1y9qA PDBj 1e-10 33.8 %
:RPS:PDB 13->186 2axuK PDBj 6e-16 11.0 %
:RPS:SCOP 1->176 1ey2A b.82.1.4 * 2e-15 10.3 %
:HMM:SCOP 5->83 1y9qA1 a.35.1.8 * 8.5e-14 35.4 %
:HMM:SCOP 64->184 1sefA_ b.82.1.11 * 1.8e-21 25.6 %
:RPS:PFM 17->71 PF01381 * HTH_3 4e-09 50.0 %
:HMM:PFM 17->69 PF01381 * HTH_3 3e-17 43.4 53/55
:HMM:PFM 117->175 PF07883 * Cupin_2 1.3e-06 32.8 58/71
:BLT:SWISS 13->171 YDCN_ECOLI 1e-15 28.9 %
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56156.1
GT:GENE BAD56156.1
GT:PRODUCT putative DNA-binding protein
GT:DATABASE GIB00210CH01
GT:ORG nfar0
GB:ACCESSION GIB00210CH01
GB:LOCATION 1467920..1468483
GB:FROM 1467920
GB:TO 1468483
GB:DIRECTION +
GB:PRODUCT putative DNA-binding protein
GB:PROTEIN_ID BAD56156.1
LENGTH 187
SQ:AASEQ MANDDTATPQAVIAASLRRERTRAGLSLSEVAARAGIAKSTLSQLESGSGNPSLETLWALCVALDMPFSRLLDPPRPVVHVIRAGEGPAVAAERSDYHATLLAAGPSNTRRDLFRITAEPGQPRESQPHIPGVIEHILLAAGRALVGPTGEPVELAPGDYIAYPGDAPHVFEALEPGTWATLVIEYA
GT:EXON 1|1-187:0|
BL:SWS:NREP 1
BL:SWS:REP 13->171|YDCN_ECOLI|1e-15|28.9|152/178|
BL:PDB:NREP 1
BL:PDB:REP 13->174|1y9qA|1e-10|33.8|148/173|
RP:PDB:NREP 1
RP:PDB:REP 13->186|2axuK|6e-16|11.0|172/295|
RP:PFM:NREP 1
RP:PFM:REP 17->71|PF01381|4e-09|50.0|52/55|HTH_3|
HM:PFM:NREP 2
HM:PFM:REP 17->69|PF01381|3e-17|43.4|53/55|HTH_3|
HM:PFM:REP 117->175|PF07883|1.3e-06|32.8|58/71|Cupin_2|
GO:PFM:NREP 1
GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387|
RP:SCP:NREP 1
RP:SCP:REP 1->176|1ey2A|2e-15|10.3|175/419|b.82.1.4|
HM:SCP:REP 5->83|1y9qA1|8.5e-14|35.4|79/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains|
HM:SCP:REP 64->184|1sefA_|1.8e-21|25.6|121/0|b.82.1.11|1/1|RmlC-like cupins|
OP:NHOMO 345
OP:NHOMOORG 261
OP:PATTERN ---------------1--1-1-----------------1-12-------------------------- ----2---------2----------1----------2123-----1------211--1---211-2412-------------1-----------------------------------------------------111----------------------------------------------------1--22222222-22212211111-222---2---------2--------------------21-------------------------------------------------------------------------21112212-1--2111----1---1-1--11----1--1-------------------12--1-1-1----111-111-11--11111112----1-------12-121------1111241---------------1-----------------------------------1----1111111111111111111-11111111--111-------1---11--1-1---------------1-----------------------111114------------------------1--112-12--------1111---1111----1---------------22---311111111111-11111111-111111111-12122--221222222232222223--1---1--1--------------------------131---------------1111112-----112112121-11--21---------------11111-----------------------111111-----------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 186
STR:RPRED 99.5
SQ:SECSTR cccHHcccHHHHcHHHHHHHHHHTTccHHHHHTTTTTcHHHHHHHTTTcccccHHHHHHHHHHHTccHHHHHHHTHHHHHHHHTTTcGGGHHHHHHHHHHHTTTcHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHTccccHHHHHHHHGGcccccccccHHHH#
DISOP:02AL 1-6, 122-127|
PSIPRED ccccHHccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEccccHHHHHcccccEEEEEccccEEEEEEccccccccEEEEEEEEcccccccccccccccEEEEEEEEEEEEEEEccEEEEEccccEEEEcccccEEEEEcccccEEEEEEEEc
//
[GTOP]
