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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56157.1
DDBJ      :             putative transposase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  152/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.3.1
:301 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  143->299 2ebfX3  d.3.1.17 * 1e-14 2.9 %
:RPS:PFM   141->229 PF01609 * Transposase_11 6e-08 40.5 %
:HMM:PFM   102->298 PF01609 * Transposase_11 1.1e-16 23.5 162/207  
:BLT:SWISS 12->109 Y4SN_RHISN 3e-10 36.6 %
:BLT:SWISS 150->299 T6501_BRUO2 1e-07 30.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56157.1 GT:GENE BAD56157.1 GT:PRODUCT putative transposase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1468521..1469426) GB:FROM 1468521 GB:TO 1469426 GB:DIRECTION - GB:PRODUCT putative transposase GB:PROTEIN_ID BAD56157.1 LENGTH 301 SQ:AASEQ MTSVAVAGRADLTDAQWARLVPLLPRPKKAGRPPMWTKRQLIDGIRWRTRVGCPWRDVPPQYGSWSAVYGLFRRWQRGGVWWLIVKMLQVFADATGSIRWQVSVDSTIIRAHQHAAGARRDGAAQAEPPGGDGQLEPADHGLGRSRGGWTTKLHLACEQGCRVLSLLVTPGQAADSPQFTTVLDEIEVAKIGGGRARVRPQRVLADKAYSTRANRAWLRRHGIRATIPVPADQAANRRNRGASGGRPPAFDPVVHRDRDAVERGINQLKQHRAVATRYDKLAVRYQATIHIAVINQWLRTQ GT:EXON 1|1-301:0| BL:SWS:NREP 2 BL:SWS:REP 12->109|Y4SN_RHISN|3e-10|36.6|93/125| BL:SWS:REP 150->299|T6501_BRUO2|1e-07|30.2|129/130| SEG 111->126|ahqhaagarrdgaaqa| SEG 234->249|aanrrnrgasggrppa| RP:PFM:NREP 1 RP:PFM:REP 141->229|PF01609|6e-08|40.5|79/192|Transposase_11| HM:PFM:NREP 1 HM:PFM:REP 102->298|PF01609|1.1e-16|23.5|162/207|Transposase_11| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01609|IPR002559| GO:PFM GO:0004803|"GO:transposase activity"|PF01609|IPR002559| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01609|IPR002559| RP:SCP:NREP 1 RP:SCP:REP 143->299|2ebfX3|1e-14|2.9|138/192|d.3.1.17| OP:NHOMO 1050 OP:NHOMOORG 154 OP:PATTERN --------------------------------------------1-----2----------------- ----1--3--4------22-2-----3-343-4---9-99-255--51---1----M---11--2163C8------------4-------------1-----------1---------------2------------55-6-----H-1-----G---------D83B817-------------2----------------------------------------------------------------------4-1-------2----------------------------------------------------------------------------------------------------------6---489------81C156a------9ABA4D634G5-3914-398-B--1--83-27259-44-----3-1-----UUUUUUUU5C9D11-1-------------------------D-K----3------1---7----------2-------11---------------1---6----------------A19------------3------------------4-------------------------------2-3------1-----------2-9---------------------4---------------------------------------8------------------2455--6----------------6------232---1--------------------------21-----------4-2-3--1D-----TD----------9-----------21-------3-------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-8, 27-32, 114-121, 232-244| PSIPRED cccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHHHHHcccEEEEEcccccHHccccccccccccccccHHHcccccHHHHHHHHHHHccEEEEEHHHcHHHHHHHHHHHHHHHHHccc //