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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56158.1
DDBJ      :             putative endonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  258/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
d.4.1
:243 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   159->207 2qgpC PDBj 7e-06 46.8 %
:RPS:PDB   156->196 1bxiB PDBj 2e-09 22.0 %
:RPS:SCOP  136->209 1e7dA2  d.4.1.5 * 3e-08 9.6 %
:RPS:PFM   158->197 PF01844 * HNH 7e-06 50.0 %
:HMM:PFM   157->199 PF01844 * HNH 6.9e-15 37.2 43/52  
:BLT:SWISS 143->197 MCRA_ECOLI 3e-05 40.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56158.1 GT:GENE BAD56158.1 GT:PRODUCT putative endonuclease GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1469665..1470396) GB:FROM 1469665 GB:TO 1470396 GB:DIRECTION - GB:PRODUCT putative endonuclease GB:PROTEIN_ID BAD56158.1 LENGTH 243 SQ:AASEQ MKQRHGRSHEARTHRQLKPADVHNRGSGATPLHILSDYDPGAHPSGAPARRPEHGPHLTAVHSPTTDTPSINWSKRRVLLLNATYEPLTALSARRAVVLLICDKADTVHHNPEGPVVHSAGAEVAVPSVIRLRTYVRVPYRARVPMTRAALMHRDRYRCGYCGGKAETIDHVVPRSRGGEHSWENCVASCAPCNHRKADKLLSELGWTLRAPLVSPKGPHWRLLSTTAELDPVWLQYLGEGAA GT:EXON 1|1-243:0| BL:SWS:NREP 1 BL:SWS:REP 143->197|MCRA_ECOLI|3e-05|40.7|54/100| BL:PDB:NREP 1 BL:PDB:REP 159->207|2qgpC|7e-06|46.8|47/88| RP:PDB:NREP 1 RP:PDB:REP 156->196|1bxiB|2e-09|22.0|41/129| RP:PFM:NREP 1 RP:PFM:REP 158->197|PF01844|7e-06|50.0|40/49|HNH| HM:PFM:NREP 1 HM:PFM:REP 157->199|PF01844|6.9e-15|37.2|43/52|HNH| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01844|IPR002711| GO:PFM GO:0004519|"GO:endonuclease activity"|PF01844|IPR002711| RP:SCP:NREP 1 RP:SCP:REP 136->209|1e7dA2|3e-08|9.6|73/103|d.4.1.5| OP:NHOMO 310 OP:NHOMOORG 273 OP:PATTERN -------------------------------------------------------------------- 11111---------11111-1111111111111111222211111-1--111121-11--11--1112221-----------1-1----------------------11----------------11-11111-11111111111131221112211121112111123211221311121111111111------------------------------------------1----------------------------------------------------------------------------------------------------------------------1---------------------1-11111-----111221111111111111111111-11111111111-1111111111111111111111111111111111111111111-----------------------------11111----------------------------------11---121111--121-------------------11------1------------------111122---------------------------1----1-1--1------------------------1-1--------------------------------------------------------------------------------------------------------12----------------------------------------------------------------------111111-1111111------1111----------------------------------------------12- ------------------------------------------------------------------------------------------------------------3------------------------------------------------------------------111--1111-21-2-111-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 104 STR:RPRED 42.8 SQ:SECSTR #####################################################################################################ccHHHHHHHTTcccccHHHHHHHHHHHHTTcTTTGGGccHHHHHHHHTTccccccGGGccTTccccEEEEcccTTTTcccccGGEEEEcHHHHHHH##HHccTTTH#################################### DISOP:02AL 1-26| PSIPRED ccccccccHHHHHHcccccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccccccccccccEEEEcccccEEEEEcHHHHHHHHHHccEEEEEEcccccEEEccccEEEcccEEEEEcccccccccccHHHHHHHHHHHccEEEcccccccEEEEEcEEcccccccHHHHHHHHHHHccccccccHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHccccc //