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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56160.1
DDBJ      :             putative alpha-glucosidase
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  593/915 : Eukaryota  118/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:531 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   14->463 1m53A PDBj 4e-67 41.5 %
:RPS:PDB   8->530 3czkA PDBj 4e-47 21.2 %
:RPS:SCOP  15->469 1m53A2  c.1.8.1 * 3e-67 35.2 %
:HMM:SCOP  11->469 1m53A2 c.1.8.1 * 9e-118 41.0 %
:RPS:PFM   45->383 PF00128 * Alpha-amylase 8e-33 41.5 %
:HMM:PFM   38->383 PF00128 * Alpha-amylase 8.9e-72 37.7 297/316  
:HMM:PFM   31->39 PF02412 * TSP_3 0.001 100.0 9/16  
:BLT:SWISS 10->497 AGLA_RHIME 3e-72 38.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56160.1 GT:GENE BAD56160.1 GT:PRODUCT putative alpha-glucosidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION 1471073..1472668 GB:FROM 1471073 GB:TO 1472668 GB:DIRECTION + GB:PRODUCT putative alpha-glucosidase GB:PROTEIN_ID BAD56160.1 LENGTH 531 SQ:AASEQ MTATPAVPDDPRRSWWRSAVFYQVYPRSFADSDGDGVGDLGGVREKLGYLELLGVNALWICPVMRSPMADGGYDVSDPRDIDPLFGGMAAMDALIAEAHARDIKVTMDLVPNHTSDRHPWFAEALRSAPGSPARARYIFRDGRGPDGSLPPNNWPSIFGGPAWTRVTEPDGTPGQWYLHLFAREQPDLNWENPEVVADFEKTLRFWLDRGVDGFRIDVAHGMAKPADLPDMAAVSTKMLIHDDSDPRFNNPGVHDIHRRIRKVLDEYPHAVSIGEVWVDDNTRFGEYVRPDELHLAFNFRLAETPFRAEAVREAIENSLAAVAEVGAPPTWTLSNHDIEREVTRYGGGARGVARARAMILVELALPGAVFLYNGSELGLPNVDDLPEEVLQDPVWERSGHTERGRDGCRVPLPWEGERPPFGFTRAERSWLPIPPEWADLTVEAQLERLDSTLCLYRMAVDLRGTRPEFAGEGLEWYGSPPGRLAFRRPGGLVCVLNTTEEPIPLPPGEPLLTSTPLDNGHLPPDAAAWLV GT:EXON 1|1-531:0| BL:SWS:NREP 1 BL:SWS:REP 10->497|AGLA_RHIME|3e-72|38.8|474/551| SEG 31->43|dsdgdgvgdlggv| SEG 344->357|rygggargvarara| SEG 498->513|tteepiplppgepllt| BL:PDB:NREP 1 BL:PDB:REP 14->463|1m53A|4e-67|41.5|431/556| RP:PDB:NREP 1 RP:PDB:REP 8->530|3czkA|4e-47|21.2|491/618| RP:PFM:NREP 1 RP:PFM:REP 45->383|PF00128|8e-33|41.5|287/296|Alpha-amylase| HM:PFM:NREP 2 HM:PFM:REP 38->383|PF00128|8.9e-72|37.7|297/316|Alpha-amylase| HM:PFM:REP 31->39|PF02412|0.001|100.0|9/16|TSP_3| GO:PFM:NREP 3 GO:PFM GO:0003824|"GO:catalytic activity"|PF00128|IPR006047| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00128|IPR006047| GO:PFM GO:0043169|"GO:cation binding"|PF00128|IPR006047| RP:SCP:NREP 1 RP:SCP:REP 15->469|1m53A2|3e-67|35.2|440/478|c.1.8.1| HM:SCP:REP 11->469|1m53A2|9e-118|41.0|444/478|c.1.8.1|1/1|(Trans)glycosidases| OP:NHOMO 1753 OP:NHOMOORG 726 OP:PATTERN --1-------------1-------3--3213-------------------1----1-221-111---- 35-2712122211-13222-22--2222222113331133142242422231589324--1132514754244332321--12-----111--2----------44-54----------------121221112-245456---62367111111--33211211-21211--1111---11-7653412-163333334333333443244415334543-267355454-332222222222222211132442-46-1525992246222442544222422222223333433232322223333222222211-222231--32222222526-222-2215-13---6-1-1-1--5--11113--2--23331-----1233111-22222------------21511423322-2224542354332132222-333311---------1---1-32------------------------------22-2--1-11111-111111111131-111-111111---1124-1-----15---112-21----------222-1-1--111-------111-11--1441413-----------------------------3341333-2252211113-111-11-1--1---2---------25---212222222222-22222223222222222223432111-221212222222222231112222--222222222222-------------1-515----21-------------------4611311212311114111---------1112311111133332133233122------11221111--------1-2----1---1-3-----21--31---422233133312- ----11---------443325556252-------------------1123586724122222-12-2441--3-5574B7-22225-1-2-1421121211-1-------6111111--1--11111117B1-11511-11-11111---11111111124628537BBFG--23---2--------1-3----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 530 STR:RPRED 99.8 SQ:SECSTR HHHccccHHHHHHHHccTTGGGcTTccEEEEcHHHHHccHHHHHHTHHHHHHHTccEEEEcccEEEcccccTTcEEEEEEEcTTTccHHHHHHHHHHHHHTTcEEEEEccccEEETTcHHcHHHHHTTcHHHHTTccEEcccHHHHHHHHcccccTTTccccEEEEEHHETTTTEEEEccccTTEEEccTTcHHHHHHHHHHHHHHHHTTccEEEETTTTccccccTTccTTTccccHHcccTTccccccHHHHHHHHHHHHHHHHcTTcEEEEcccccGGGcGGGGccGccccEEEcHHHHHHHTcTHHHHHHHHTcHHccccTTcEEEEEccccccEEGGGcccccHGHHHHTcccccccccHHHHHHHHHTccTTcccccEEEccccEEEHHHHTTcHHHHHHccEEEEEETTGGGTccccGGGGGGGGGGcccccHHHHHTTccTTcHHHHHHHHHHHHHHHHHHHTcGEEcccccTTEEEEEETTTEEEEEEcccccEEEcGGGTTcccEccccccEcTTcEEEE# PSIPRED ccccccccccccccccccccEEEEEccHHccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHccccEEEEccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHccccccccEEEcccccccccHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEccHHccccccccccHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHccHHHHHccHHHHHHHHHHHHHHHHHcHHHccccEEEEEccccEEEEEEcccEEEEEEcccccEEcccccEEEEccccccccccccEEEEEc //