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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56163.1
DDBJ      :             putative aminopeptidase
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  571/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
b.98.1d.92.1
:860 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->458 1z1wA PDBj 7e-69 38.7 %
:RPS:PDB   7->653 2dqmA PDBj 2e-99 18.9 %
:RPS:SCOP  6->199 1gw6A2  b.98.1.1 * 3e-27 17.6 %
:RPS:SCOP  215->461 1gw6A3  d.92.1.13 * 4e-52 28.2 %
:HMM:SCOP  3->200 1hs6A2 b.98.1.1 * 4.9e-41 37.5 %
:HMM:SCOP  208->461 1hs6A3 d.92.1.13 * 3.6e-77 43.0 %
:RPS:PFM   40->392 PF01433 * Peptidase_M1 1e-62 43.4 %
:RPS:PFM   424->857 PF11838 * DUF3358 e-100 53.3 %
:HMM:PFM   424->859 PF11838 * DUF3358 2.2e-171 56.8 426/428  
:HMM:PFM   18->392 PF01433 * Peptidase_M1 1.2e-74 31.0 364/391  
:BLT:SWISS 1->850 AMPN_STRLI 0.0 53.8 %
:PROS 300->309|PS00142|ZINC_PROTEASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56163.1 GT:GENE BAD56163.1 GT:PRODUCT putative aminopeptidase GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1473551..1476133) GB:FROM 1473551 GB:TO 1476133 GB:DIRECTION - GB:PRODUCT putative aminopeptidase GB:PROTEIN_ID BAD56163.1 LENGTH 860 SQ:AASEQ MSAPNLTRDQAIERAATVRVENYRIELDLTDQSADVSGVRTFGSRTTVTFTATPGASTFIDIVAARVRSAVLNGTALDVSGYDESTGITLPGLAERNELVVEADCEYSHTGEGLHRFVDPADGKVYLYSQFETADAKRMFACFDQPDLKATFDITATAPLDWEVVSNGAGGRTEVGEVAVHTFATTPRMSTYLVAMIAGPYAKWTDTYRDEHGDIPLGLYCRASLAEHMDAERLFTETKQGFGFYHRNFGVPYAFGKYDQLFVPEFNAGAMENAGAVTFLEDYVFRSKVTRASYERRAETVLHEMAHMWFGDLVTMKWWDDLWLNESFATFASVLCQAEATEYTSAWTTFANVEKSWAYRQDQLPSTHPIAADIPDLAAVEVNFDGITYAKGASVLKQLVAYVGLEPFLAGLRAYFAEHAYGNATFDDLLTALEKSSGRDLSTWGAQWLKTTGLNILRPEFDVDADGRFTSFAVVQEGAQPGAGERRVHRLAVGVYDDQDGKLVRTHRVELDLDAAERTEVPELQGVARGKLVLVNDDDLTYCSVRLDPESLDVLVNRIADIAEPLPRTLAWSAAWEMTRQAEFRARDFVALVQRGVGAETEIGVVQRLLMQAHTALAGYADPAWAEGVGWTEFADRLLELAREAEPGSDHQLAFVNALTGARLEARHTEVLTELLDGDPAAVGLAGLTVDTDLRWRLVTALAAAGEIDADGLETPVIDRELAADPTAAGKRQAAAAATARPQAEVKAAAWATVMEDDTVPNITARSIVGGFAPVGQSELLAPYVERYFADIPAVWERRSSEVAQTVVVGLYPAWAISAEAVAVADKFLAGDHPPALRRLVSEGKAGVERALRARAFDAR GT:EXON 1|1-860:0| BL:SWS:NREP 1 BL:SWS:REP 1->850|AMPN_STRLI|0.0|53.8|833/857| PROS 300->309|PS00142|ZINC_PROTEASE|PDOC00129| SEG 726->744|ptaagkrqaaaaatarpqa| SEG 814->825|awaisaeavava| BL:PDB:NREP 1 BL:PDB:REP 18->458|1z1wA|7e-69|38.7|419/780| RP:PDB:NREP 1 RP:PDB:REP 7->653|2dqmA|2e-99|18.9|624/867| RP:PFM:NREP 2 RP:PFM:REP 40->392|PF01433|1e-62|43.4|343/379|Peptidase_M1| RP:PFM:REP 424->857|PF11838|e-100|53.3|422/425|DUF3358| HM:PFM:NREP 2 HM:PFM:REP 424->859|PF11838|2.2e-171|56.8|426/428|DUF3358| HM:PFM:REP 18->392|PF01433|1.2e-74|31.0|364/391|Peptidase_M1| GO:PFM:NREP 2 GO:PFM GO:0008237|"GO:metallopeptidase activity"|PF01433|IPR014782| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01433|IPR014782| RP:SCP:NREP 2 RP:SCP:REP 6->199|1gw6A2|3e-27|17.6|188/208|b.98.1.1| RP:SCP:REP 215->461|1gw6A3|4e-52|28.2|234/252|d.92.1.13| HM:SCP:REP 3->200|1hs6A2|4.9e-41|37.5|192/208|b.98.1.1|1/1|Leukotriene A4 hydrolase N-terminal domain| HM:SCP:REP 208->461|1hs6A3|3.6e-77|43.0|244/252|d.92.1.13|1/1|Metalloproteases ("zincins"), catalytic domain| OP:NHOMO 2227 OP:NHOMOORG 794 OP:PATTERN ------21222222221211111-----------------------1--1111--------222--11 1121432222221131111-12112211111222223233-22211142211342233113352332B6611111111----------11-1-1--1--22331251423------------------1-1----11--1------111-111--111111111112111111-1111111-1-11---------------------------------------------1----------------------111111111111111111111111111111111111111111111111111111111111--111---1-----------------------------------------------------41111111111-----------11111111111-11111111111-1111111111111112-1111111111--------11111-1-------------------------------122121111-22222222222222122222222111111122111111111121112111-11111111122--111-1-1----------212--1-1-331354-1--------------------1----11111212223313444433344443434434--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--141111122221111111111111111111122222211111111111111111111111111111-111-1111111111111113434433311111-2-221111------------------------------------------------- 1111562-533-4434321333333333333332222333233333333435432334333344444343445454424442222222-252325222224224543534KEEBHFG8878896A97E6Q*G1D9L7787C5BDB88879D56I7B89AAOVGNBNCZFRbAFDK2334P3215343762493456763 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 680 STR:RPRED 79.1 SQ:SECSTR EEEEcccEEGGGcccccEEEEEEEEEEEcccccTEEEEEEEEEEEEEEEEcccTTccEEEEccccEEEEEEETTEEcccEEEETTEEEEcccccEEEEEEEEEcGGGcTTccEEEEETTEEEETTEEEEEcTTTTGGGTccccccTTcccEEEEEEEEETTTccEEEEccEEEEEEEccEEEEEccccccGGGccEEEEccEEEEEEEEcTTccEEEEEEEcTTcGGGGGcHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccEEccTTEEEEEGGGTcTTTccHHHHHHHHHHHHHHHHTTTcTTTEEEccGGGHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHTHHHHHTcTTcccccccEEcTccGGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEcHHHHHHHHHHHHTcccTTTGTHHHHcccccEEEEEEEEETTTTEEEEEEEEEcccTTccccccccEEEEEEEEcTTccccccEETTEEETTEEcccEEEEcccEEEEEEcccccccEEEEcGGGccccEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHTTTccccccHHHHHHHHHHHHcTTccHHHHHHHTccccHHHHTTcccccHHHHHHHHHHHHHHEEEEETTcHHHHHHHTTccc#################################################################################################################################################################################### DISOP:02AL 1-3, 859-860| PSIPRED cccccccccHHHcccccEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEccccEEEEEEccEEEEEEEEcEEEccEEcccEEEEEEccccccEEEEEEEEEEEccccEEEEEEEEccccEEEEEEEcccccccEEEEEEcccccccEEEEEEEEccccEEEEcccccccccccEEEEEEEccccccHHHHHHEEcccEEEEccEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHccccccccHHHEEcccccccHHHHHHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEEEEcccccccccEEEEEEccccccEEEEEccccccccEEEEEcccEEEEEEEccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccc //