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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56167.1
DDBJ      :             putative sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  137/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.177.1a.4.13g.51.1
:410 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->159 2q1zA PDBj 1e-04 25.8 %
:RPS:PDB   6->161 3dxjF PDBj 1e-09 8.3 %
:RPS:SCOP  6->73 1z77A2  a.121.1.1 * 1e-06 14.7 %
:RPS:SCOP  94->199 1adtA3  g.51.1.1 * 1e-10 12.3 %
:HMM:SCOP  2->76 1h3lA_ a.177.1.1 * 1.2e-15 33.3 %
:HMM:SCOP  98->165 1or7A1 a.4.13.2 * 2.5e-08 27.9 %
:HMM:PFM   13->80 PF04542 * Sigma70_r2 2.1e-12 25.0 68/71  
:HMM:PFM   110->159 PF08281 * Sigma70_r4_2 8.2e-12 34.0 50/54  
:BLT:SWISS 6->356 Y370_RHIME 7e-62 43.9 %
:PROS 131->158|PS00622|HTH_LUXR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56167.1 GT:GENE BAD56167.1 GT:PRODUCT putative sigma factor GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1479329..1480561) GB:FROM 1479329 GB:TO 1480561 GB:DIRECTION - GB:PRODUCT putative sigma factor GB:PROTEIN_ID BAD56167.1 LENGTH 410 SQ:AASEQ MKPDADTLALEDLLRTVAPQVLGVLVRRFGDFDTAEDAVQEALLAAATQWREAGIPENPRGWLIQVAQRRYVDTVRAESARRRRETAVFEREVPDAAAVDRDDTLAMFFLCCHPALPTAGAIALTLRAVGGLTTAEIANAFLVPEATMAQRISRAKKRLAAVRQPFARPDRAQWRQRVGTVLHVLYLIFTEGHAPSSGDRPQRADLSAEAIRLTRAMHRLLPEDTEVAGLLALMLLTDARRAARTGPHGELVPLDRQDRARWDRRQIMAGIRLVTATLAHGLSGPYQVQAAIAAVHAQAPRAEDTDWPKILALYDVLQRLSPGPVVALNRAVAVAMVHGPEAGLAITETLAADLAGSHRLSAVRAHLLDMAGADEDAVAAYTDAARRTTSIPERDYLTLRAAELRHRRRD GT:EXON 1|1-410:0| BL:SWS:NREP 1 BL:SWS:REP 6->356|Y370_RHIME|7e-62|43.9|351/100| PROS 131->158|PS00622|HTH_LUXR_1|PDOC00542| SEG 74->88|tvraesarrrretav| SEG 255->266|drqdrarwdrrq| SEG 290->302|aaiaavhaqapra| BL:PDB:NREP 1 BL:PDB:REP 6->159|2q1zA|1e-04|25.8|151/176| RP:PDB:NREP 1 RP:PDB:REP 6->161|3dxjF|1e-09|8.3|156/349| HM:PFM:NREP 2 HM:PFM:REP 13->80|PF04542|2.1e-12|25.0|68/71|Sigma70_r2| HM:PFM:REP 110->159|PF08281|8.2e-12|34.0|50/54|Sigma70_r4_2| RP:SCP:NREP 2 RP:SCP:REP 6->73|1z77A2|1e-06|14.7|68/125|a.121.1.1| RP:SCP:REP 94->199|1adtA3|1e-10|12.3|81/126|g.51.1.1| HM:SCP:REP 2->76|1h3lA_|1.2e-15|33.3|75/75|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 98->165|1or7A1|2.5e-08|27.9|68/68|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 245 OP:NHOMOORG 140 OP:PATTERN -------------------------------------------------------------------- -23-A---------211-------12------23337457-213-9------2-11-2--343-313324------------------------------11----13-1--------------------------------------------------------1--1------------------------------------------------------1-------2--------------------------------------------------------------------------------------------------------------------------------------------2-21222------1322---1-111-----------------1--14--3---43133311111----------1---------------1---------------------------------11-----1111111-111111221111-1111--------111-----112-----------------------------------------------111132---------------------------------11-----------------------2---------------------------------------------------------------------------------------------------------------1----------------------------111111111111111---------------------------11-1-11-----------11---------------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------1--------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 156 STR:RPRED 38.0 SQ:SECSTR #####HHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHH######################################################################################################################################################################################################################################################### DISOP:02AL 1-2, 165-173, 404-410| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccc //