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Nocardia farcinica IFM 10152 (nfar0)
Gene : BAD56171.1
DDBJ      :             hypothetical protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:348 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   130->275 3c37B PDBj 7e-04 31.7 %
:RPS:PDB   130->315 3c37B PDBj 6e-11 22.2 %
:RPS:PFM   132->239 PF01435 * Peptidase_M48 3e-10 38.2 %
:HMM:PFM   106->226 PF01435 * Peptidase_M48 2.3e-22 35.1 114/225  
:HMM:PFM   232->306 PF01435 * Peptidase_M48 1.1e-06 35.2 71/225  
:BLT:SWISS 101->213 HTPX_BACHD 1e-05 35.2 %
:BLT:SWISS 209->309 COBB_RHILO 2e-04 43.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAD56171.1 GT:GENE BAD56171.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00210CH01 GT:ORG nfar0 GB:ACCESSION GIB00210CH01 GB:LOCATION complement(1483139..1484185) GB:FROM 1483139 GB:TO 1484185 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID BAD56171.1 LENGTH 348 SQ:AASEQ MHPHEPTPQPHAGPPAEPFAPTGAWGVPSAPTGYPPYPNTYGGPPVPPAQQPRGLSPWGRPALHSWEIPLLVVVVVVTALVYLIALALFVDAVLSGATLNDYLLLLVFAPALVWAGRGINYATQRVNGVKMSPTQFPEGYRMVAEAAARFGMTTVPDAYVVLGNGQINAFASGHGFRRFVVVYSDLFEIGGAAREPDALAFIIGHEVGHIAAGHTSYWRQLGMFLVPFLPILGNALIRAQEYTADNHGYCHRHTGAPAAMGTLAAGKYLNTVVGFDEMADRAATEKGGFVWLVNALSSHPVLTWRMWALRDRSRHGKLFWRPSPRPGHQPPVPVPYGEVPGLPPKPVG GT:EXON 1|1-348:0| BL:SWS:NREP 2 BL:SWS:REP 101->213|HTPX_BACHD|1e-05|35.2|108/304| BL:SWS:REP 209->309|COBB_RHILO|2e-04|43.0|86/439| TM:NTM 2 TM:REGION 67->89| TM:REGION 97->119| SEG 31->48|ptgyppypntyggppvpp| SEG 70->88|llvvvvvvtalvylialal| SEG 321->344|rpsprpghqppvpvpygevpglpp| BL:PDB:NREP 1 BL:PDB:REP 130->275|3c37B|7e-04|31.7|139/216| RP:PDB:NREP 1 RP:PDB:REP 130->315|3c37B|6e-11|22.2|153/216| RP:PFM:NREP 1 RP:PFM:REP 132->239|PF01435|3e-10|38.2|102/208|Peptidase_M48| HM:PFM:NREP 2 HM:PFM:REP 106->226|PF01435|2.3e-22|35.1|114/225|Peptidase_M48| HM:PFM:REP 232->306|PF01435|1.1e-06|35.2|71/225|Peptidase_M48| GO:PFM:NREP 3 GO:PFM GO:0004222|"GO:metalloendopeptidase activity"|PF01435|IPR001915| GO:PFM GO:0006508|"GO:proteolysis"|PF01435|IPR001915| GO:PFM GO:0016020|"GO:membrane"|PF01435|IPR001915| OP:NHOMO 30 OP:NHOMOORG 28 OP:PATTERN ---------------------------------------------------1---------------- --------------1---------1------1----1111------1-----------------------2------------------------------------------------------------------------------------------------------------------------------------------1--------------1------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------11-1-------------------------------------------1111---1111-1--1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 204 STR:RPRED 58.6 SQ:SECSTR ##############################################################################################################TTGGGTcEccccccHTEccTccccccHHHHHHHHHHHHHccccccccEEEEEccccccEEEETcTTTTEEEEEHHHHHHH#HcccHHHHHHHHHHHHHHHHTTHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccHHHHHHHHTTccTTHHHHHHHHHTccccccHHHHHHHHHHHHT################################# DISOP:02AL 1-12, 279-287, 315-348| PSIPRED ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEccccccEEEEEccccccEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHcHHccccccccccccccccccccccccccccccccc //